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Report for CCDS41394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41394.1 Public Homo sapiens 1 TDRKH 24 110 108 CCDS HistoryNCBI Gene:11022Re-query CCDS DB by CCDS ID:41394.1Re-query CCDS DB by GeneID:11022See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41394.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368822.5 ENSP00000357812.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368822.5Link to Ensembl Protein Viewer:ENSP00000357812.1Re-query CCDS DB by Nucleotide ID:ENST00000368822Re-query CCDS DB by Protein ID:ENSP00000357812
Original member Current member EBI ENST00000368824.8 ENSP00000357815.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368824.8Link to Ensembl Protein Viewer:ENSP00000357815.3Re-query CCDS DB by Nucleotide ID:ENST00000368824Re-query CCDS DB by Protein ID:ENSP00000357815
Original member Current member EBI ENST00000368827.10 ENSP00000357819.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368827.10Link to Ensembl Protein Viewer:ENSP00000357819.6Re-query CCDS DB by Nucleotide ID:ENST00000368827Re-query CCDS DB by Protein ID:ENSP00000357819
Original member Current member EBI ENST00000458431.6 ENSP00000395718.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458431.6Link to Ensembl Protein Viewer:ENSP00000395718.2Re-query CCDS DB by Nucleotide ID:ENST00000458431Re-query CCDS DB by Protein ID:ENSP00000395718
Original member Current member NCBI NM_001083963.1 NP_001077432.1 Accepted alive Link to Nucleotide Sequence:NM_001083963.1Link to Protein Sequence:NP_001077432.1Re-query CCDS DB by Nucleotide ID:NM_001083963Re-query CCDS DB by Protein ID:NP_001077432Link to BLAST:NP_001077432.1
Original member Current member NCBI NM_001083965.2 NP_001077434.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001083965.2Link to Protein Sequence:NP_001077434.1Re-query CCDS DB by Nucleotide ID:NM_001083965Re-query CCDS DB by Protein ID:NP_001077434Link to BLAST:NP_001077434.1
Original member Current member NCBI NM_006862.4 NP_006853.2 Accepted alive Link to Nucleotide Sequence:NM_006862.4Link to Protein Sequence:NP_006853.2Re-query CCDS DB by Nucleotide ID:NM_006862Re-query CCDS DB by Protein ID:NP_006853Link to BLAST:NP_006853.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077432.1 561 Q9Y2W6-2 561 100% 0 0
NP_001077434.1 561 Q9Y2W6-2 561 100% 0 0
NP_006853.2 561 Q9Y2W6-2 561 100% 0 0

Chromosomal Locations for CCDS 41394.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151774452 151774504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151774710 151774806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151775065 151775166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151775392 151775543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151775820 151775884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151776096 151776268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151776439 151776599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151778685 151779006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151779103 151779242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151779951 151780140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151781481 151781587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151782899 151783022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGTCTACTGAACGGACTTCTTGGACAAGCCTGTCCACCATTCAGAAAATAGCCCTGGGCCTTGGGATCC
CAGCCAGTGCAACAGTTGCCTATATCCTATACCGCAGGTATAGGGAAAGCAGAGAAGAGCGGCTGACATT
TGTTGGGGAAGATGACATTGAGATAGAGATGCGGGTTCCCCAGGAGGCTGTGAAACTCATCATTGGCCGG
CAAGGAGCCAATATTAAACAGCTGCGGAAACAGACAGGTGCTCGGATTGATGTGGACACAGAGGATGTAG
GCGATGAGCGAGTGCTGCTTATCAGTGGTTTTCCTGTTCAGGTGTGCAAGGCCAAAGCAGCAATCCATCA
GATCCTGACAGAGAATACCCCAGTGTCTGAGCAGCTTTCAGTTCCCCAGAGATCTGTGGGCAGAATCATA
GGGAGAGGCGGCGAGACAATTCGTTCTATCTGTAAGGCATCTGGAGCCAAAATTACCTGTGACAAAGAAT
CAGAAGGGACATTACTACTATCAAGACTTATAAAAATCTCAGGAACACAGAAGGAAGTGGCAGCAGCCAA
GCATTTGATACTGGAGAAAGTTTCAGAAGATGAAGAACTTCGGAAGAGAATTGCTCATTCTGCAGAAACC
AGGGTCCCACGCAAACAGCCAATCAGTGTGAGAAGAGAAGACATGACAGAGCCAGGTGGAGCTGGAGAGC
CAGCATTATGGAAAAACACCAGTTCTAGCATGGAGCCGACTGCACCCCTGGTGACTCCTCCACCCAAAGG
AGGAGGCGACATGGCTGTGGTAGTGTCAAAGGAAGGTTCCTGGGAGAAACCTAGTGATGACAGCTTTCAG
AAGTCTGAAGCCCAGGCCATCCCAGAGATGCCCATGTTTGAAATCCCCAGTCCTGACTTCAGTTTTCATG
CTGATGAGTACCTAGAAGTCTACGTTTCTGCTTCTGAGCACCCTAACCACTTCTGGATCCAGATCGTTGG
CTCCCGCAGCCTGCAATTGGATAAGCTTGTCAATGAGATGACCCAGCACTATGAGAATAGTGTGCCTGAA
GACTTGACTGTGCATGTAGGAGACATTGTAGCAGCACCTTTACCTACAAATGGTTCCTGGTATCGAGCCC
GGGTCCTCGGCACCTTGGAGAATGGGAACTTGGACCTCTATTTTGTTGACTTTGGAGATAATGGAGATTG
CCCACTGAAGGACCTCAGGGCTCTCAGGAGTGACTTCCTAAGCCTTCCATTTCAAGCAATAGAATGTAGT
CTGGCACGGATTGCTCCCTCAGGTGACCAGTGGGAAGAGGAAGCTTTGGATGAGTTTGATAGACTCACTC
ATTGTGCTGACTGGAAGCCTCTGGTAGCCAAGATCTCTAGCTATGTCCAGACTGGGATCTCAACTTGGCC
AAAGATCTACTTATATGATACTAGCAATGGGAAGAAACTTGATATTGGGCTAGAATTAGTACACAAAGGA
TACGCAATTGAGCTTCCTGAAGACATAGAAGAAAACAGAGCTGTCCCAGACATGTTGAAGGACATGGCCA
CAGAAACAGATGCCTCTCTCAGCACGTTGCTCACTGAGACCAAAAAGAGCTCTGGAGAGATAACACATAC
CCTGTCCTGCCTCAGCTTATCAGAAGCTGCTTCCATGTCTGGTGATGATAACCTTGAAGATGACTACTTA
CTCTGA

Translation (561 aa):
MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVPQEAVKLIIGR
QGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAIHQILTENTPVSEQLSVPQRSVGRII
GRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAET
RVPRKQPISVRREDMTEPGGAGEPALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQ
KSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPE
DLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS
LARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWPKIYLYDTSNGKKLDIGLELVHKG
YAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYL
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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