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Report for CCDS41298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41298.1 Public Homo sapiens 1 NHSL3 24 110 108 CCDS HistoryNCBI Gene:57648Re-query CCDS DB by CCDS ID:41298.1Re-query CCDS DB by GeneID:57648See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401073.7 ENSP00000383851.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000401073.7Link to Ensembl Protein Viewer:ENSP00000383851.2Re-query CCDS DB by Nucleotide ID:ENST00000401073Re-query CCDS DB by Protein ID:ENSP00000383851
Original member Current member NCBI NM_020888.3 NP_065939.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020888.3Link to Protein Sequence:NP_065939.2Re-query CCDS DB by Nucleotide ID:NM_020888Re-query CCDS DB by Protein ID:NP_065939Link to BLAST:NP_065939.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065939.2 1094 Q9P206-2 1094 100% 0 0

Chromosomal Locations for CCDS 41298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32741955 32742189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32767787 32767957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32768062 32768117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32768652 32768775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32769673 32769786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32769880 32772441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32772865 32772887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3285 nt):
ATGGCGGCCCGCGCGCCCCCCGCCGCACCTGCGGCCGAGGAGCCGGGGAACCCGGGCGGCCCCCCGCGCA
GGAAGAAGTCCCGCTCCGGCGCGTCCGGCCTCCGCCGCGCCTTCAGCTGGCTGCGGGGCAAGCGGCGCAA
GAAGAAGGCGGCGGGGGCCGAGGGCGCCGAACCGGCCGCCCCCCGGGCCAAGAAGGCGGAGGACAAGGCC
AAGAGGGCCAAGGGCAAAGGCCGAGGCTCTGCCAAGGCTGAGAATGACAAACATCTAAGTGTAGGGCCTG
GCCAGGGGCCAGGGTCTGCAGTGGATGAGCACCAGGACAACGTCTTCTTTCCCAGTGGGCGACCCCCCCA
CCTGGAAGAGCTGCACACTCAGGCCCAGGAGGGGCTCCGCTCCCTACAACACCAAGAGAAACAGAAACTG
AACAAGGGTGGCTGGGACCATGGAGACACCCAGAGTATCCAGTCCTCCCGGACGGGGCCGGATGAAGACA
ACATCTCCTTCTGCAGTCAGACCACATCCTACGTGGCTGAGAGCTCCACAGCAGAGGACGCGCTCTCCAT
CCGCTCGGAGATGATCCAGCGCAAAGGCTCCACCTTCCGACCCCATGACTCATTTCCCAAATCTGGAAAG
TCAGGGCGGCGTCGGCGGGAGCGGCGGAGCACTGTGCTGGGACTCCCGCAGCATGTGCAGAAGGAGCTTG
GCCTGAGGAATGAGCGTGAGGCACCAGGCACGCCCCGGGCTCCTGGTGCACGGGATGCCGTACGCATCCC
CACAGTGGACGGCCGCCCCCGAGGCACCTCAGGGATGGGGGCCCGGGTGTCCCTGCAGGCGCTGGAGGCG
GAGGCGGAGGCTGGCGCTGAGACAGAGGCCATGCTGCAGCGCCACATTGACCGTGTCTACCGGGATGACA
CCTTTGTTGGCCGGTCCACGGGTACCCGGGCCCCACCATTGACCCGGCCCATGTCCCTAGCAGTGCCTGG
ATTGACAGGAGGGGCAGGGCCTGCAGAGCCCCTGAGCCCGGCCATGTCCATCTCCCCCCAGGCCACCTAC
CTGTCGAAGTTGATTCCACATGCTGTGCTGCCGCCTACAGTGGACGTGGTGGCCCTAGGCCGCTGCAGCC
TGCGCACACTAAGCCGCTGCAGCCTGCACTCGGCCAGCCCAGCCTCAGTCCGCTCGCTGGGGCGCTTCTC
CTCCGTCTCCAGCCCACAGCCCCGCAGCCGCCACCCATCCTCCTCCAGTGACACCTGGAGCCACTCTCAA
TCCTCCGACACCATTGTGTCTGACGGTTCCACCCTCTCCTCTAAGGGTGGCTCTGAGGGCCAGCCGGAGA
GCTCTACGGCTAGCAATAGCGTGGTACCCCCTCCCCAGGGAGGCAGTGGGAGGGGCTCTCCCAGTGGGGG
CAGCACTGCTGAGGCCTCAGACACACTCAGCATTCGGAGCAGTGGGCAGTTGTCTGGCCGGAGTGTGTCC
CTGCGTAAGCTGAAGCGGCCTCCACCCCCTCCCCGCCGGACCCACTCCCTCCATCAGCGGGGCTTAGCAG
TGCCTGATGGGCCATTAGGGTTGCCCCCTAAGCCTGAGCGTAAGCAGCAGCCCCAGCTGCCTCGGCCACC
CACCACTGGTGGCTCAGAAGGGGCGGGGGCAGCACCCTGTCCACCCAACCCAGCCAACAGCTGGGTACCT
GGCTTGTCTCCGGGTGGTTCCCGGCGCCCCCCACGGTCCCCAGAACGGACACTTTCGCCCTCCAGTGGAT
ACTCGAGCCAAAGTGGTACTCCCACCCTCCCTCCCAAGGGCCTGGCAGGTCCCCCTGCTTCCCCAGGCAA
GGCCCAGCCCCCTAAACCAGAGCGTGTCACGTCTCTTCGCTCCCCTGGGGCCTCCGTCTCCTCTTCCCTC
ACGTCTTTATGTTCCTCCTCCTCTGACCCAGCCCCCTCAGACCGCTCTGGGCCACAGATATTGACCCCCC
TGGGTGACAGGTTTGTCATACCTCCTCACCCCAAGGTGCCTGCCCCCTTCTCCCCACCTCCCTCCAAGCC
CAGGAGCCCTAACCCAGCTGCCCCTGCTCTAGCCGCCCCTGCTGTGGTTCCTGGGCCTGTTTCTACCACT
GACGCCAGTCCTCAGTCCCCTCCCACTCCCCAGACAACCTTGACTCCACTGCAGGAGTCTCCTGTCATCT
CCAAAGACCAGTCACCCCCACCTTCCCCACCCCCATCTTATCATCCACCCCCACCACCCACTAAGAAGCC
AGAGGTGGTTGTGGAGGCACCATCTGCCTCAGAGACTGCTGAGGAGCCCCTCCAAGATCCCAACTGGCCC
CCTCCCCCACCCCCTGCCCCTGAGGAGCAGGACCTGTCCATGGCTGACTTCCCCCCACCAGAGGAGGCTT
TTTTCTCTGTGGCCAGCCCTGAGCCTGCAGGCCCTTCAGGCTCCCCAGAGCTTGTCAGCTCCCCGGCTGC
TTCGTCCTCCTCAGCTACTGCTTTGCAGATTCAGCCCCCGGGTAGCCCAGACCCTCCTCCAGCTCCGCCA
GCCCCAGCTCCTGCTAGTTCCGCCCCAGGGCATGTGGCCAAGCTCCCTCAGAAGGAACCGGTGGGCTGTA
GCAAGGGTGGTGGGCCTCCCAGGGAGGACGTAGGTGCGCCCCTGGTCACGCCCTCGCTCCTGCAGATGGT
GCGGCTGCGCTCCGTGGGTGCTCCAGGAGGGGCTCCCACCCCAGCACTGGGGCCATCGGCCCCCCAGAAA
CCACTGCGAAGGGCCCTGTCAGGGCGGGCCAGCCCAGTGCCTGCCCCCTCCTCAGGGCTCCATGCTGCGG
TCCGACTCAAGGCCTGCAGCCTGGCCGCCAGTGAAGGCCTCTCAAGTGCTCAGCCCAACGGACCGCCTGA
GGCAGAGCCACGGCCTCCCCAGTCCCCTGCCTCAACGGCCAGTTTCATCTTCTCCAAGGGCTCTAGGAAG
CTGCAGCTGGAGCGGCCCGTGTCCCCTGAGACCCAGGCTGACCTCCAGCGGAATCTGGTGGCAGAACTCC
GGAGCATCTCAGAGCAGCGGCCACCCCAGGCCCCAAAGAAGTCACCTAAGGCTCCCCCACCTGTGGCCCG
CAAGCCGTCTGTGGGAGTCCCCCCACCCGCCTCCCCCAGTTACCCTCGAGCTGAGCCCCTTACTGCTCCT
CCCACCAATGGGCTCCCTCACACCCAGGACAGGACTAAGAGGGAGCTGGCGGAGAATGGAGGTGTCCTGC
AGCTGGTGGGCCCAGAGGAGAAGATGGGCCTCCCGGGCTCAGACTCACAGAAAGAGCTGGCCTGA

Translation (1094 aa):
MAARAPPAAPAAEEPGNPGGPPRRKKSRSGASGLRRAFSWLRGKRRKKKAAGAEGAEPAAPRAKKAEDKA
KRAKGKGRGSAKAENDKHLSVGPGQGPGSAVDEHQDNVFFPSGRPPHLEELHTQAQEGLRSLQHQEKQKL
NKGGWDHGDTQSIQSSRTGPDEDNISFCSQTTSYVAESSTAEDALSIRSEMIQRKGSTFRPHDSFPKSGK
SGRRRRERRSTVLGLPQHVQKELGLRNEREAPGTPRAPGARDAVRIPTVDGRPRGTSGMGARVSLQALEA
EAEAGAETEAMLQRHIDRVYRDDTFVGRSTGTRAPPLTRPMSLAVPGLTGGAGPAEPLSPAMSISPQATY
LSKLIPHAVLPPTVDVVALGRCSLRTLSRCSLHSASPASVRSLGRFSSVSSPQPRSRHPSSSSDTWSHSQ
SSDTIVSDGSTLSSKGGSEGQPESSTASNSVVPPPQGGSGRGSPSGGSTAEASDTLSIRSSGQLSGRSVS
LRKLKRPPPPPRRTHSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPTTGGSEGAGAAPCPPNPANSWVP
GLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQPPKPERVTSLRSPGASVSSSL
TSLCSSSSDPAPSDRSGPQILTPLGDRFVIPPHPKVPAPFSPPPSKPRSPNPAAPALAAPAVVPGPVSTT
DASPQSPPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEPLQDPNWP
PPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATALQIQPPGSPDPPPAPP
APAPASSAPGHVAKLPQKEPVGCSKGGGPPREDVGAPLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQK
PLRRALSGRASPVPAPSSGLHAAVRLKACSLAASEGLSSAQPNGPPEAEPRPPQSPASTASFIFSKGSRK
LQLERPVSPETQADLQRNLVAELRSISEQRPPQAPKKSPKAPPPVARKPSVGVPPPASPSYPRAEPLTAP
PTNGLPHTQDRTKRELAENGGVLQLVGPEEKMGLPGSDSQKELA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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