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Report for CCDS41248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41248.1 Public Homo sapiens 1 AGTRAP 24 110 108 CCDS HistoryNCBI Gene:57085Re-query CCDS DB by CCDS ID:41248.1Re-query CCDS DB by GeneID:57085See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41248.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400895.6 ENSP00000383688.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400895.6Link to Ensembl Protein Viewer:ENSP00000383688.2Re-query CCDS DB by Nucleotide ID:ENST00000400895Re-query CCDS DB by Protein ID:ENSP00000383688
Original member Current member NCBI NM_001040197.2 NP_001035287.1 Accepted alive Link to Nucleotide Sequence:NM_001040197.2Link to Protein Sequence:NP_001035287.1Re-query CCDS DB by Nucleotide ID:NM_001040197Re-query CCDS DB by Protein ID:NP_001035287Link to BLAST:NP_001035287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035287.1 147 Q6RW13-3 147 100% 0 0

Chromosomal Locations for CCDS 41248.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 11736209 11736235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11745803 11745837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11746127 11746223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11747440 11747545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11748415 11748593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGAGCTGCCTGCTGTGAACCTGAAGGTGATTCTCCTAGGTCACTGGCTGCTGACAACCTGCTTCTGGA
GACATTTCTCTGCCAAACCAAGACTGGAAACCATTGAGCTCACCTGTGCACTTTGCAAACTTCGAAGTGC
AGCGCACAGGGCAACAGCTGGGCTGCATTGTATTCTCAGGCTCCTATGCCTGGGCCAACTTCACCATCCT
GGCCTTGGGCGTGTGGGCTGTGGCTCAGCGGGACTCCATCGACGCCATAAGCATGTTTCTGGGTGGCTTG
CTGGCCACCATCTTCCTGGACATCGTGCACATCAGCATCTTCTACCCGCGGGTCAGCCTCACGGACACGG
GCCGCTTTGGCGTGGGCATGGCCATCCTCAGCTTGCTGCTCAAGCCGCTCTCCTGCTGCTTCGTCTACCA
CATGTACCGGGAGCGCGGGGGTGA

Translation (147 aa):
MELPAVNLKVILLGHWLLTTCFWRHFSAKPRLETIELTCALCKLRSAAHRATAGLHCILRLLCLGQLHHP
GLGRVGCGSAGLHRRHKHVSGWLAGHHLPGHRAHQHLLPAGQPHGHGPLWRGHGHPQLAAQAALLLLRLP
HVPGARG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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