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Report for CCDS41243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41243.1 Public Homo sapiens 1 RERE 24 110 108 CCDS HistoryNCBI Gene:473Re-query CCDS DB by CCDS ID:41243.1Re-query CCDS DB by GeneID:473See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41243.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000476556.5 ENSP00000422246.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000476556.5Link to Ensembl Protein Viewer:ENSP00000422246.1Re-query CCDS DB by Nucleotide ID:ENST00000476556Re-query CCDS DB by Protein ID:ENSP00000422246
Original member Current member EBI ENST00000465125.2 ENSP00000515651.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000465125.2Link to Ensembl Protein Viewer:ENSP00000515651.1Re-query CCDS DB by Nucleotide ID:ENST00000465125Re-query CCDS DB by Protein ID:ENSP00000515651
Original member Current member NCBI NM_001042682.2 NP_001036147.1 Accepted alive Link to Nucleotide Sequence:NM_001042682.2Link to Protein Sequence:NP_001036147.1Re-query CCDS DB by Nucleotide ID:NM_001042682Re-query CCDS DB by Protein ID:NP_001036147Link to BLAST:NP_001036147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036147.1 1012 Q9P2R6-2 1012 100% 0 0

Chromosomal Locations for CCDS 41243.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 8355087 8355120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8355419 8355599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8356100 8356246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8358196 8358916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8359764 8359986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8360112 8361490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8361763 8361876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8362683 8362844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8364056 8364133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3039 nt):
ATGTTCAAACCCGTCAAGGAAGAGGATGATGGGCTCAGTGGGAAGCATAGCATGAGGACACGGCGGAGTC
GGGGCTCGATGTCGACACTACGCAGTGGTCGGAAGAAGCAGCCAGCCAGCCCTGATGGTCGCACCTCACC
CATCAATGAAGACATCCGCTCCAGCGGCCGGAACTCCCCCAGCGCTGCCAGTACCTCCAGCAATGACAGT
AAAGCAGAGACAGTGAAGAAGTCGGCCAAGAAGGTGAAGGAGGAAGCCTCTTCCCCTCTTAAGAGTAACA
AACGCCAGCGGGAGAAGGTGGCCTCTGATACGGAGGAGGCTGACAGGACCAGCTCCAAGAAGACAAAAAC
GCAGGAGATCAGCAGGCCCAACTCGCCATCTGAAGGTGAGGGAGAGAGTTCAGACAGTCGCAGCGTCAAC
GATGAGGGTAGCAGTGACCCCAAAGACATCGACCAGGACAATCGCAGCACGTCCCCGAGCATCCCCAGCC
CCCAGGACAATGAGAGTGACTCGGACTCGTCAGCCCAGCAGCAGATGCTGCAGGCCCAGCCCCCAGCCTT
GCAGGCTCCCACTGGGGTCACCCCAGCTCCCTCCTCAGCTCCTCCAGGGACCCCTCAGCTGCCCACGCCA
GGGCCCACGCCCTCTGCCACTGCAGTTCCCCCACAGGGCTCCCCCACGGCCTCCCAGGCCCCTAACCAGC
CACAGGCTCCCACAGCGCCTGTTCCCCACACCCACATCCAACAGGCACCGGCCTTGCACCCCCAGCGGCC
GCCCTCACCGCATCCCCCGCCGCATCCCTCGCCACATCCCCCGCTGCAGCCTCTGACTGGGTCGGCGGGC
CAGCCTTCTGCACCCTCTCATGCCCAGCCCCCACTGCACGGTCAGGGCCCACCCGGCCCTCACAGCCTGC
AGGCTGGGCCCCTGCTGCAGCACCCAGGCCCCCCACAGCCCTTTGGCCTCCCTCCCCAGGCCTCCCAAGG
CCAGGCCCCTCTGGGGACCTCCCCAGCAGCAGCGTACCCTCACACCTCCCTGCAGCTGCCAGCCTCTCAG
TCAGCGCTGCAGTCCCAACAGCCTCCACGGGAGCAGCCCCTGCCACCAGCGCCCTTGGCCATGCCCCACA
TCAAGCCCCCGCCTACCACTCCCATCCCCCAGCTGCCGGCGCCACAGGCCCACAAGCACCCTCCCCACCT
CTCGGGGCCCTCACCCTTCTCCATGAATGCCAACCTGCCTCCCCCTCCAGCCCTGAAGCCCCTGAGCTCC
CTGTCCACACATCACCCCCCGTCGGCTCACCCCCCACCCCTGCAACTCATGCCTCAGAGCCAGCCATTGC
CCTCCTCGCCCGCCCAGCCCCCCGGGCTGACCCAGAGCCAGAACCTGCCCCCGCCCCCTGCCTCCCACCC
CCCTACAGGCCTCCACCAGGTGGCCCCCCAACCCCCGTTTGCTCAGCACCCCTTTGTCCCTGGAGGCCCT
CCTCCCATCACCCCTCCGACCTGCCCCTCCACCTCTACCCCACCGGCGGGACCTGGCACCTCGGCCCAGC
CACCCTGCTCTGGTGCGGCGGCTTCAGGAGGCAGCATAGCGGGGGGGTCGTCCTGCCCACTCCCCACCGT
CCAGATCAAGGAGGAGGCTCTGGACGACGCTGAGGAGCCTGAGAGCCCCCCTCCCCCACCAAGGAGCCCG
TCCCCGGAGCCCACTGTGGTGGACACCCCCAGTCACGCCAGCCAGTCAGCTAGGTTCTACAAACACCTGG
ACCGGGGCTACAACTCGTGTGCCCGGACAGACCTGTACTTCATGCCTCTGGCCGGGTCCAAGCTGGCCAA
GAAGAGGGAGGAGGCCATTGAGAAGGCCAAGCGCGAGGCTGAGCAGAAAGCCCGAGAGGAGCGAGAGCGG
GAGAAGGAGAAGGAGAAGGAGCGGGAGCGGGAGCGAGAGCGGGAGCGCGAGGCAGAGCGGGCGGCTAAGG
CGTCCAGCTCAGCGCATGAAGGTCGCCTCAGTGACCCACAGCTCAGTGGTCCTGGCCACATGCGGCCATC
CTTCGAGCCACCACCAACCACCATTGCTGCTGTGCCCCCCTACATCGGGCCCGACACACCTGCCCTTCGG
ACTCTGAGCGAGTACGCCCGGCCCCACGTCATGTCGCCCACCAACCGCAACCACCCCTTCTACATGCCCC
TTAACCCCACGGACCCCCTGCTGGCCTACCACATGCCTGGCCTCTACAACGTCGACCCCACCATCCGCGA
GCGGGAGCTCCGGGAGCGGGAGATCCGAGAGCGGGAGATCCGAGAGCGGGAGCTGCGGGAGAGGATGAAG
CCGGGCTTCGAGGTGAAGCCCCCAGAGCTGGACCCCCTGCACCCAGCCGCCAACCCCATGGAGCACTTTG
CCCGGCACAGCGCCCTCACCATCCCCCCGACCGCCGGGCCCCACCCTTTTGCTTCTTTCCACCCGGGCCT
GAACCCCTTGGAGAGGGAGAGACTGGCCCTGGCGGGCCCCCAGCTGCGGCCCGAGATGAGCTACCCTGAC
AGACTGGCAGCCGAGCGTATCCACGCAGAGCGCATGGCATCGCTGACCAGCGATCCCCTGGCCCGACTGC
AGATGTTCAACGTGACTCCGCACCATCACCAGCACTCTCACATTCACTCCCACCTCCACCTCCACCAGCA
GGACCCCCTCCACCAAGGTTCAGCAGGCCCCGTTCACCCGCTGGTCGACCCCCTGACTGCCGGTCCCCAC
CTGGCTCGCTTCCCCTACCCGCCTGGCACTCTCCCCAACCCTCTGCTTGGACAGCCCCCACACGAGCACG
AGATGCTTCGCCACCCAGTTTTCGGCACCCCCTACCCCCGTGACCTGCCTGGGGCCATCCCACCCCCCAT
GTCAGCAGCCCACCAGCTGCAGGCCATGCATGCCCAGTCGGCCGAGCTGCAGAGACTGGCCATGGAGCAG
CAGTGGCTGCATGGACACCCCCACATGCATGGTGGCCACCTACCAAGTCAGGAAGATTATTACAGTCGAC
TGAAGAAAGAAGGTGACAAGCAGTTATAA

Translation (1012 aa):
MFKPVKEEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDS
KAETVKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESSDSRSVN
DEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTP
GPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAG
QPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQ
SALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSS
LSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGP
PPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPPPPRSP
SPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREERER
EKEKEKEREREREREREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALR
TLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAYHMPGLYNVDPTIRERELREREIREREIRERELRERMK
PGFEVKPPELDPLHPAANPMEHFARHSALTIPPTAGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPD
RLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPLTAGPH
LARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQ
QWLHGHPHMHGGHLPSQEDYYSRLKKEGDKQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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