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Report for CCDS4122.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4122.2 Public Homo sapiens 5 ATG12 24 110 108 CCDS HistoryNCBI Gene:9140Re-query CCDS DB by CCDS ID:4122.2Re-query CCDS DB by GeneID:9140See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 4122.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data. The previously represented start codon has a very weak Kozak signal and the N-terminal extension is poorly conserved, even among other higher primate species. It is likely that the ribosome will bypass the upstream start codon due to leaky scanning, and thus, the downstream start codon, which has a strong Kozak signal and is very well-conserved, will be used.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4122.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509910.2 ENSP00000425107.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000509910.2Link to Ensembl Protein Viewer:ENSP00000425107.1Re-query CCDS DB by Nucleotide ID:ENST00000509910Re-query CCDS DB by Protein ID:ENSP00000425107
Original member Current member NCBI NM_004707.4 NP_004698.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004707.4Link to Protein Sequence:NP_004698.3Re-query CCDS DB by Nucleotide ID:NM_004707Re-query CCDS DB by Protein ID:NP_004698Link to BLAST:NP_004698.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004698.3 140 O94817-1 140 100% 0 0

Chromosomal Locations for CCDS 4122.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115831804 115831863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115832602 115832664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115837628 115837764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115841390 115841552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGCGGAGGAGCCGCAGTCTGTGTTGCAGCTTCCTACTTCAATTGCTGCTGGAGGGGAAGGACTTACGG
ATGTCTCCCCAGAAACAACCACCCCGGAGCCCCCGTCTTCCGCTGCAGTTTCCCCGGGAACAGAGGAACC
TGCTGGCGACACCAAGAAAAAAATTGACATTTTGCTAAAGGCTGTGGGAGACACTCCTATTATGAAAACA
AAGAAGTGGGCAGTAGAGCGAACACGAACCATCCAAGGACTCATTGACTTCATCAAAAAGTTTCTTAAAC
TTGTGGCCTCAGAACAGTTGTTTATTTATGTGAATCAGTCCTTTGCTCCTTCCCCAGACCAAGAAGTTGG
AACTCTCTATGAGTGTTTTGGCAGTGATGGTAAACTGGTTTTACATTACTGCAAGTCTCAGGCGTGGGGA
TGA

Translation (140 aa):
MAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKT
KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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