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Report for CCDS41207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41207.1 Public Mus musculus X Gemin8 23 108 98 CCDS HistoryNCBI Gene:237221Re-query CCDS DB by CCDS ID:41207.1Re-query CCDS DB by GeneID:237221See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087169.10 ENSMUSP00000084414.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087169.10Link to Ensembl Protein Viewer:ENSMUSP00000084414.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087169Re-query CCDS DB by Protein ID:ENSMUSP00000084414
Original member Current member EBI ENSMUST00000056410.10 ENSMUSP00000085137.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056410.10Link to Ensembl Protein Viewer:ENSMUSP00000085137.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056410Re-query CCDS DB by Protein ID:ENSMUSP00000085137
Original member Current member EBI ENSMUST00000130880.8 ENSMUSP00000118482.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130880.8Link to Ensembl Protein Viewer:ENSMUSP00000118482.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000130880Re-query CCDS DB by Protein ID:ENSMUSP00000118482
Original member Current member NCBI NM_001310722.1 NP_001297651.1 Accepted alive Link to Nucleotide Sequence:NM_001310722.1Link to Protein Sequence:NP_001297651.1Re-query CCDS DB by Nucleotide ID:NM_001310722Re-query CCDS DB by Protein ID:NP_001297651Link to BLAST:NP_001297651.1
Original member Current member NCBI NM_146238.4 NP_666350.2 Accepted alive Link to Nucleotide Sequence:NM_146238.4Link to Protein Sequence:NP_666350.2Re-query CCDS DB by Nucleotide ID:NM_146238Re-query CCDS DB by Protein ID:NP_666350Link to BLAST:NP_666350.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297651.1 238 Q8BHE1 238 100% 0 0
NP_666350.2 238 Q8BHE1 238 100% 0 0

Chromosomal Locations for CCDS 41207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 166178828 166178830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166180353 166180809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166189244 166189500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCCTCCAACTGGAGGGCTAGTGCATCTTGGTATTCTCACCCAGTATATGCAAGATACTGGCAACATT
ATCATCACGCAATGCTTTGGATGCAGGGCCACCAGAATGCCTACAGAAAGTTCAGGGATTCCTATTTCAC
ATCCCCGTGGCTCTTCCCTCATGGAGCTCTTCCCTGGAACTCTCCTGCTTATGAGGCTGGGCATCCTTGG
GACTCTCAAGGCCAGCACATGGCGCAGCAGGAGTCTCCCTACCGTGTTTCCCATCCCAAAAGCCCTGGGC
AGCCTCTGCGTAATAGCAGTAGAACCCAGGCATCCACAAGAGGGAATGAAGCACGGTGTGAGGAGGAAGA
GCTGGAGTCAGATTCAGATGATGAAGTAGAGTGCGACCTGAGCAATATGGAGATCACCGAGGAGCTCCGG
CAGTACTTCGCGCAGACCGAGAGGCACAGAGAGGAGAGAAGGCGACAGCAGCAGCTGGACGCAGAGCGCC
TGAATGACTATGTGAATGCGGACCATGGCCTGTACTTCAACCACCGTAGGTCACTGGAACCCCCATCTGA
GAAGCCCTGGGAGCGGCGCCAAGCAGAGATGAAGCGCTTATATGGCAACAGTGCTCCCAAGATCCTGGCC
ATGGAGACTGCTGTACAGCTGAGCTTTGACAAGCACTGTGACAGAAAGCAACCAAAGTACTGGCCTGTCA
TTCCCCTGAAGTTCTGA

Translation (238 aa):
MASNWRASASWYSHPVYARYWQHYHHAMLWMQGHQNAYRKFRDSYFTSPWLFPHGALPWNSPAYEAGHPW
DSQGQHMAQQESPYRVSHPKSPGQPLRNSSRTQASTRGNEARCEEEELESDSDDEVECDLSNMEITEELR
QYFAQTERHREERRRQQQLDAERLNDYVNADHGLYFNHRRSLEPPSEKPWERRQAEMKRLYGNSAPKILA
METAVQLSFDKHCDRKQPKYWPVIPLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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