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Report for CCDS4117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4117.1 Public Homo sapiens 5 CCDC112 24 110 108 CCDS HistoryNCBI Gene:153733Re-query CCDS DB by CCDS ID:4117.1Re-query CCDS DB by GeneID:153733See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395557.4 ENSP00000378925.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395557.4Link to Ensembl Protein Viewer:ENSP00000378925.4Re-query CCDS DB by Nucleotide ID:ENST00000395557Re-query CCDS DB by Protein ID:ENSP00000378925
Original member Current member EBI ENST00000512261.5 ENSP00000423712.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512261.5Link to Ensembl Protein Viewer:ENSP00000423712.1Re-query CCDS DB by Nucleotide ID:ENST00000512261Re-query CCDS DB by Protein ID:ENSP00000423712
Original member Current member NCBI NM_001375898.1 NP_001362827.1 Accepted alive Link to Nucleotide Sequence:NM_001375898.1Link to Protein Sequence:NP_001362827.1Re-query CCDS DB by Nucleotide ID:NM_001375898Re-query CCDS DB by Protein ID:NP_001362827Link to BLAST:NP_001362827.1
Original member Current member NCBI NM_001375899.1 NP_001362828.1 Accepted alive Link to Nucleotide Sequence:NM_001375899.1Link to Protein Sequence:NP_001362828.1Re-query CCDS DB by Nucleotide ID:NM_001375899Re-query CCDS DB by Protein ID:NP_001362828Link to BLAST:NP_001362828.1
Original member Current member NCBI NM_152549.3 NP_689762.2 Accepted alive Link to Nucleotide Sequence:NM_152549.3Link to Protein Sequence:NP_689762.2Re-query CCDS DB by Nucleotide ID:NM_152549Re-query CCDS DB by Protein ID:NP_689762Link to BLAST:NP_689762.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362827.1 446 Q8NEF3-1 446 100% 0 0
NP_001362828.1 446 Q8NEF3-1 446 100% 0 0
NP_689762.2 446 Q8NEF3-1 446 100% 0 0

Chromosomal Locations for CCDS 4117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115267876 115267918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115268882 115269000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115269703 115269798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115271213 115271626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115275216 115275606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115275994 115276069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115276965 115277054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115279647 115279758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGAAAAAGATAAACACAGTCATTTCTACAACCAAAAAAGTGACTTCAGAATTGAGCATAGTATGCTAG
AAGAATTGGAAAATAAATTGATTCACAGCAGGAAAACAGAAAGAGCAAAAATCCAGCAACAATTGGCCAA
AATACATAATAATGTAAAGAAACTTCAGCATCAATTAAAAGATGTGAAGCCTACACCTGATTTTGTTGAG
AAGCTCAGAGAAATGATGGAAGAAATTGAAAATGCAATTAACACTTTTAAAGAAGAGCAGAGGTTGATAT
ATGAAGAGCTAATTAAAGAAGAGAAGACAACTAATAATGAGTTGAGTGCCATATCAAGAAAAATTGACAC
ATGGGCTTTGGGTAATTCAGAAACAGAGAAAGCTTTCAGAGCAATCTCAAGCAAAGTTCCTGTAGACAAA
GTAACACCAAGTACTCTTCCAGAAGAGGTACTAGATTTTGAAAAATTCCTTCAGCAAACAGGAGGGCGAC
AAGGTGCCTGGGATGATTATGATCACCAGAACTTTGTAAAGGTGAGAAACAAACATAAAGGGAAGCCAAC
ATTTATGGAAGAAGTTCTAGAACACCTTCCTGGAAAAACACAAGATGAAGTTCAACAGCATGAAAAATGG
TATCAAAAGTTTCTGGCTCTAGAAGAAAGAAAAAAAGAGTCAATTCAGATTTGGAAAACTAAAAAGCAGC
AAAAAAGGGAGGAAATTTTCAAGTTAAAGGAAAAGGCAGACAACACACCTGTGCTTTTTCATAATAAACA
AGAGGATAATCAAAAGCAAAAAGAGGAACAAAGAAAGAAACAGAAATTGGCAGTTGAAGCTTGGAAGAAA
CAGAAAAGTATAGAAATGTCAATGAAATGTGCTTCCCAGTTAAAAGAAGAAGAAGAGAAAGAGAAAAAAC
ATCAGAAAGAACGCCAGCGCCAGTTTAAGTTAAAATTACTACTAGAAAGTTATACCCAGCAGAAGAAAGA
ACAGGAAGAATTTTTGAGGCTTGAAAAGGAGATAAGGGAAAAGGCAGAAAAGGCAGAAAAAAGGAAAAAT
GCTGCTGATGAAATTTCCAGATTTCAAGAAAGAGATTTACATAAACTTGAACTGAAAATTCTAGATAGAC
AGGCAAAGGAAGATGAAAAGTCACAAAAACAAAGAAGACTGGCAAAATTAAAAGAAAAGGTTGAAAACAA
TGTTAGTAGAGATCCCTCTAGGCTTTACAAACCCACCAAAGGTTGGGAAGAACGAACCAAAAAGATAGGA
CCAACAGGCTCTGGGCCACTTCTACATATCCCACATAGGGCTATTCCAACCTGGAGACAAGGAATACAGA
GAAGAGTATGA

Translation (446 aa):
MEKDKHSHFYNQKSDFRIEHSMLEELENKLIHSRKTERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVE
KLREMMEEIENAINTFKEEQRLIYEELIKEEKTTNNELSAISRKIDTWALGNSETEKAFRAISSKVPVDK
VTPSTLPEEVLDFEKFLQQTGGRQGAWDDYDHQNFVKVRNKHKGKPTFMEEVLEHLPGKTQDEVQQHEKW
YQKFLALEERKKESIQIWKTKKQQKREEIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKKQKLAVEAWKK
QKSIEMSMKCASQLKEEEEKEKKHQKERQRQFKLKLLLESYTQQKKEQEEFLRLEKEIREKAEKAEKRKN
AADEISRFQERDLHKLELKILDRQAKEDEKSQKQRRLAKLKEKVENNVSRDPSRLYKPTKGWEERTKKIG
PTGSGPLLHIPHRAIPTWRQGIQRRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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