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Report for CCDS41119.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41119.2 Public Mus musculus X Srpx2 23 108 98 CCDS HistoryNCBI Gene:68792Re-query CCDS DB by CCDS ID:41119.2Re-query CCDS DB by GeneID:68792See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 41119.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in rat.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 41119.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033606.14 ENSMUSP00000033606.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033606.14Link to Ensembl Protein Viewer:ENSMUSP00000033606.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000033606Re-query CCDS DB by Protein ID:ENSMUSP00000033606
Original member Current member EBI ENSMUST00000113304.1 ENSMUSP00000108929.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113304.1Link to Ensembl Protein Viewer:ENSMUSP00000108929.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113304Re-query CCDS DB by Protein ID:ENSMUSP00000108929
Original member Current member NCBI NM_001083895.3 NP_001077364.2 Accepted alive Link to Nucleotide Sequence:NM_001083895.3Link to Protein Sequence:NP_001077364.2Re-query CCDS DB by Nucleotide ID:NM_001083895Re-query CCDS DB by Protein ID:NP_001077364Link to BLAST:NP_001077364.2
Original member Current member NCBI NM_026838.4 NP_081114.2 Accepted alive Link to Nucleotide Sequence:NM_026838.4Link to Protein Sequence:NP_081114.2Re-query CCDS DB by Nucleotide ID:NM_026838Re-query CCDS DB by Protein ID:NP_081114Link to BLAST:NP_081114.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077364.2 468 Q8R054 468 100% 0 0
NP_081114.2 468 Q8R054 468 100% 0 0

Chromosomal Locations for CCDS 41119.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 133910647 133910731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133915308 133915394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133923636 133923827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133925807 133925983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133926237 133926363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133927073 133927194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133928571 133928750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133929056 133929189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133930177 133930298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133931286 133931466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGATGACCAGTCCACTGACTCAGAGAGGTGCTCTCTCACTGCTGCTCCTCCTAATGCCCGCAGTGACAC
CAACATGGTACGCAGGCTCAGGTTACTCTCCAGATGAAAGCTACAATGAAGTATATGCAGAAGAGGTCCC
CGCTGCCCGTGCCCGTGCCCTGGACTACAGAGTCCCCCGATGGTGTTACACATTGAATATCCAGGATGGA
GAAGCCACATGCTACTCACCAAGGGGAGGAAATTATCACAGTAGCCTAGGCACACGTTGTGAGCTCTCCT
GTGACCGGGGCTTTCGATTGATTGGACGGAAGTCAGTGCAATGTTTGCCAAGCCGGCGTTGGTCTGGAAC
TGCCTACTGCAGGCAGATAAGGTGCCACACACTGCCATTCATCACTAGTGGCACCTATACGTGCACCAAT
GGAATGCTGCTTGACTCCCGTTGTGACTATAGCTGTTCTAGTGGCTACCACCTAGAAGGAGATCGCAGCC
GCATCTGCATGGAAGATGGGCGATGGAGTGGAGGCGAGCCTGTATGTGTAGACATAGATCCACCCAAGAT
CCGTTGTCCTCACTCTCGTGAGAAAATGGCAGAGCCAGAGAAACTAACTGCTCGAGTATACTGGGACCCA
CCCTTAGTGAAAGATTCTGCTGATGGTACCATCACCAGGGTGACACTTCGGGGTCCAGAGCCTGGTTCTC
ACTTCCCTGAAGGAGAACATGTGATTCGTTATACTGCCTATGACCGAGCCTACAACCGGGCCAGCTGCAA
ATTCATTGTAAAAGTACAAGTGAGACGCTGTCCCATTCTGAAGCCACCACAGCACGGCTACCTCACCTGC
AGCTCAGCGGGGGACAACTATGGTGCCATCTGTGAATACCACTGTGATGGTGGTTATGAACGCCAGGGGA
CCCCATCCCGAGTCTGCCAGTCAAGTCGACAGTGGTCAGGAACACCACCTGTCTGTACTCCTATGAAGAT
TAATGTCAATGTTAACTCGGCTGCTGGCCTCCTGGATCAGTTCTATGAGAAACAGCGACTCCTCATAGTC
TCTGCTCCTGATCCCTCCAATCGGTACTACAAAATGCAAATCTCTATGCTGCAGCAATCCACCTGTGGAC
TCGACCTGCGGCATGTGACCATTATTGAGCTGGTGGGACAGCCACCTCAGGAGGTGGGGCGCATCCGGGA
GCAACAACTATCAGCAGGCATCATTGAGGAGCTCAGGCAATTCCAGCGCCTCACTCGTTCCTACTTCAAC
ATGGTGTTAATTGACAAGCAGGGTATTGACCGGGAACGCTATATGGAACCTGTCACCCCTGAGGAAATCT
TCACATTCATCGATGACTACCTGCTGAGCAATGAGGAGCTGGCACGGAGAGTGGAGCAGAGGGACCTATG
CGAGTGA

Translation (468 aa):
MMTSPLTQRGALSLLLLLMPAVTPTWYAGSGYSPDESYNEVYAEEVPAARARALDYRVPRWCYTLNIQDG
EATCYSPRGGNYHSSLGTRCELSCDRGFRLIGRKSVQCLPSRRWSGTAYCRQIRCHTLPFITSGTYTCTN
GMLLDSRCDYSCSSGYHLEGDRSRICMEDGRWSGGEPVCVDIDPPKIRCPHSREKMAEPEKLTARVYWDP
PLVKDSADGTITRVTLRGPEPGSHFPEGEHVIRYTAYDRAYNRASCKFIVKVQVRRCPILKPPQHGYLTC
SSAGDNYGAICEYHCDGGYERQGTPSRVCQSSRQWSGTPPVCTPMKINVNVNSAAGLLDQFYEKQRLLIV
SAPDPSNRYYKMQISMLQQSTCGLDLRHVTIIELVGQPPQEVGRIREQQLSAGIIEELRQFQRLTRSYFN
MVLIDKQGIDRERYMEPVTPEEIFTFIDDYLLSNEELARRVEQRDLCE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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