NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS41003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41003.1 Public Mus musculus X Cetn2 23 108 98 CCDS HistoryNCBI Gene:26370Re-query CCDS DB by CCDS ID:41003.1Re-query CCDS DB by GeneID:26370See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41003.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114551.9 ENSMUSP00000110198.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114551.9Link to Ensembl Protein Viewer:ENSMUSP00000110198.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114551Re-query CCDS DB by Protein ID:ENSMUSP00000110198
Original member NCBI NM_019405.6 NP_062278.2 Updated not alive Link to Nucleotide Sequence:NM_019405.6Link to Protein Sequence:NP_062278.2Re-query CCDS DB by Nucleotide ID:NM_019405Re-query CCDS DB by Protein ID:NP_062278
Current member NCBI NM_019405.7 NP_062278.2 Accepted alive Link to Nucleotide Sequence:NM_019405.7Link to Protein Sequence:NP_062278.2Re-query CCDS DB by Nucleotide ID:NM_019405Re-query CCDS DB by Protein ID:NP_062278Link to BLAST:NP_062278.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062278.2 172 Q9R1K9 172 100% 0 0

Chromosomal Locations for CCDS 41003.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 72914204 72914293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72914840 72914977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72916265 72916393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72916688 72916846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72918314 72918316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCCTCTAATTTTAAGAAGACAACCATGGCATCCAGTGCCCAGAGAAAAAGGATGAGTCCTAAGCCTG
AACTTACTGAAGACCAGAAACAGGAAATCCGGGAAGCTTTTGATCTCTTTGATGCTGATGGAACTGGAAC
TATAGACATCAAAGAACTGAAGGTGGCAATGAGGGCCCTGGGCTTTGAGCCCAAGAAAGAAGAAATTAAG
AAAATGATAAGTGAAATTGATAAAGAAGGAACAGGAAAAATGAACTTCAGTGACTTTTTGACAGTGATGA
CTCAGAAAATGTCTGAGAAAGACACTAAAGAAGAAATCCTGAAAGCTTTCAAGTTGTTCGATGATGATGA
GACTGGGAAAATATCATTCAAGAATCTTAAGCGCGTGGCCAAGGAGCTGGGTGAGAACCTGACAGATGAG
GAACTGCAGGAAATGATTGATGAAGCTGATCGAGATGGAGATGGTGAGGTCAATGAGCAAGAGTTCCTGC
GCATCATGAAAAAGACCAGCCTCTATTAA

Translation (172 aa):
MASNFKKTTMASSAQRKRMSPKPELTEDQKQEIREAFDLFDADGTGTIDIKELKVAMRALGFEPKKEEIK
KMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE
ELQEMIDEADRDGDGEVNEQEFLRIMKKTSLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH