NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40776.1 Public Mus musculus 9 Fbxw26 23 108 98 CCDS HistoryNCBI Gene:382109Re-query CCDS DB by CCDS ID:40776.1Re-query CCDS DB by GeneID:382109See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071917.3 ENSMUSP00000071811.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071917.3Link to Ensembl Protein Viewer:ENSMUSP00000071811.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071917Re-query CCDS DB by Protein ID:ENSMUSP00000071811
Original member Current member NCBI NM_198674.2 NP_941076.1 Accepted alive Link to Nucleotide Sequence:NM_198674.2Link to Protein Sequence:NP_941076.1Re-query CCDS DB by Nucleotide ID:NM_198674Re-query CCDS DB by Protein ID:NP_941076Link to BLAST:NP_941076.1

Chromosomal Locations for CCDS 40776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109717955 109718060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109721663 109721787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109722058 109722236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109723714 109723924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109724790 109724948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109732504 109732713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109743664 109743782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109744791 109744954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109745149 109745186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109745966 109746055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGCAGACCCATTTGCCTAGTTTGCCGATGATGGAAATCTTCTCCTATCTGGATGCCTACAGTTTGCTAC
AGGTTGCCCAAGTGAACAAGAACTGGAATGCACTTGCAAGCAGTGATGTCCTGTGGAGGAAGTTGTGTCA
GAAGAGATGGTACTATTGTGACATGGATACCCTACAGCTCCACGGCAAAGAGACATGGAAGCAGTTCTTC
GTTTACCGAACCTGGCAAGAACATGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTC
CTGTGGAGTTTGAATTTCGGGCTTATGCATATTATATCTCAAAACATGGCTTAAAGAGAAATGGACAAGG
GAAGTCTGCTGTCTGTATGGTGACTTCCATGAACAGGATTTCTACCTGGGATATTCACGAGGGTACTATG
ACCTGGGTAAGCCCAGTACAGGAATTCTATATTGAGCTGATGACTACCCTCCCTGAGATGCACATTGTGG
TCACTGTAGATATAAGATCAACTATCAAACTGTGGGACTGTCACAACAGCGAAGCTCTAGCAACTAAGCG
CATGGTCTCTTCCTGTCAATTACTGAAAGCTGTCATTACAAAGGATGGCCCGATTGTCTTGATAGGTGAT
ATCTTGGGAAACCTCTACATCTTTAGGATTCCTGACTTACACCTCATTTCTGAGGTGAATGTATTCCCAT
TTGCTATTGATGAACTCCACTGCTCTCCTCAGAAGAAATGGGTCTTTCTGATTATGAAACACCCACATGT
CTTGACAAAGGTGTTTTACATGAGCAGCTTACTGAGGCCAACAGAATTCTCTGACCCAGTGTCTACCGTT
CTCGAATTTTCCTTATGCAAAAGAGCCTTCTGGACCCCAAGAAGGGAAGACAGGATAACCTTGATGTCCA
GAAATGTACCCCCAAGCCACACAAAATTTGGCATATTTGATATGAAGCTGGAAGAGATCGGGAACAAAGT
AACTATTCAAGGATATTTGACAGCCAGCTTCTCATTGGCAGAACATGAGGGGAGACCAGAATGCTTTGGA
GTCAGTGATAAGGACGTTTTTGTGTGTTCAACTGGATCCTCTCTCTTGCTCTTCGACATAAATGGTCTCT
GTCTGCAGTCATTTCAGTACTGCCCAGAAATGATCACGAGACTCTGTGTGGATCCTGTTCATGTCATCAT
CACCTGTAACAATGGCTCTTTGGATGTGTATGCTTGGGAGGAGAGAAGCCCGCTGCTCAGAAAGTGTTAT
CGACTGCAAAACAGGAGATACCTGCCCCCGTCCAGCTTCATTAACAAAGCACTATGTGATGATGTGAGCA
TAATTGGAGTCATGACAAATAGTCCTGCCCCCTGCTATCTGATGGCATATACCTTGAACATCTGCTCTTG
A

Translation (466 aa):
MQTHLPSLPMMEIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWYYCDMDTLQLHGKETWKQFF
VYRTWQEHAKTRAKPEDFTYKEIPVEFEFRAYAYYISKHGLKRNGQGKSAVCMVTSMNRISTWDIHEGTM
TWVSPVQEFYIELMTTLPEMHIVVTVDIRSTIKLWDCHNSEALATKRMVSSCQLLKAVITKDGPIVLIGD
ILGNLYIFRIPDLHLISEVNVFPFAIDELHCSPQKKWVFLIMKHPHVLTKVFYMSSLLRPTEFSDPVSTV
LEFSLCKRAFWTPRREDRITLMSRNVPPSHTKFGIFDMKLEEIGNKVTIQGYLTASFSLAEHEGRPECFG
VSDKDVFVCSTGSSLLLFDINGLCLQSFQYCPEMITRLCVDPVHVIITCNNGSLDVYAWEERSPLLRKCY
RLQNRRYLPPSSFINKALCDDVSIIGVMTNSPAPCYLMAYTLNICS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH