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Report for CCDS40758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40758.1 Public Mus musculus 9 Iqcf3 23 108 98 CCDS HistoryNCBI Gene:68265Re-query CCDS DB by CCDS ID:40758.1Re-query CCDS DB by GeneID:68265See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 40758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062917.15 ENSMUSP00000054276.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062917.15Link to Ensembl Protein Viewer:ENSMUSP00000054276.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000062917Re-query CCDS DB by Protein ID:ENSMUSP00000054276
Original member Current member NCBI NM_026645.3 NP_080921.2 Accepted alive Link to Nucleotide Sequence:NM_026645.3Link to Protein Sequence:NP_080921.2Re-query CCDS DB by Nucleotide ID:NM_026645Re-query CCDS DB by Protein ID:NP_080921Link to BLAST:NP_080921.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080921.2 203 Q9D498 203 100% 0 0

Chromosomal Locations for CCDS 40758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106543846 106543858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106544399 106544446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106552739 106552920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106553582 106553668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106554123 106554227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106557461 106557565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106560951 106561019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106561570 106561572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGAACTTGATCAAGATAAGAAAAAGGAAACACCAGAAGAAACAGAAAACGTTAACGAGGTGCAACTAG
AGAAGCAAAACCAAGATGAAGAAACTGAAGCTGAAGCTGAAGAGGCAGATAAAGCCATTCTTGAGAGGAG
TGATTCAGTGAAAACGGAATGTCCCCCCCAGGCAGAGAAGCAAAACCAAGATGAAGAAACTGAAGCTGAA
GCTGAAGAGGCAGATAAAGCCATACTTGAGAGGAGTGATTCAGTGAAAACGGAATGTCCCCCCCAGGCAG
AGAAGCAAATCCAAGAAGAGAAATGTGAAACTCAAGAGGCAGATAGATCTGAGGGAACCGAGTTGGGGAA
ACTTCACTCTCAGCTAGATCAGCTGCCTGATAACGTCATGCTGGCAGGCGTCAAGATCCAGGCCTGGTGG
CGAGGCACACTGGTGCGCCGAACCCTGCTGCTTGCAGCCCTCAACGCTTGGACCATTCAGTGCTGGTGGA
GAGAGGCAAAGGCCAGGCTGCAGGGGAGGAAGTTACATGAGGTGATGCGCTACAGACTGAGAAACCTAAA
CCTAAAGTCCATCAGCAAGCGAAAACAACCCAACCAAAGCTCCTTCCTTTAA

Translation (203 aa):
MELDQDKKKETPEETENVNEVQLEKQNQDEETEAEAEEADKAILERSDSVKTECPPQAEKQNQDEETEAE
AEEADKAILERSDSVKTECPPQAEKQIQEEKCETQEADRSEGTELGKLHSQLDQLPDNVMLAGVKIQAWW
RGTLVRRTLLLAALNAWTIQCWWREAKARLQGRKLHEVMRYRLRNLNLKSISKRKQPNQSSFL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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