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Report for CCDS40705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40705.1 Public Mus musculus 9 Senp6 23 108 98 CCDS HistoryNCBI Gene:215351Re-query CCDS DB by CCDS ID:40705.1Re-query CCDS DB by GeneID:215351See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037484.14 ENSMUSP00000047220.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037484.14Link to Ensembl Protein Viewer:ENSMUSP00000047220.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037484Re-query CCDS DB by Protein ID:ENSMUSP00000047220
Original member Current member NCBI NM_146003.2 NP_666115.2 Accepted alive Link to Nucleotide Sequence:NM_146003.2Link to Protein Sequence:NP_666115.2Re-query CCDS DB by Nucleotide ID:NM_146003Re-query CCDS DB by Protein ID:NP_666115Link to BLAST:NP_666115.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666115.2 1132 Q6P7W0-1 1132 100% 0 0

Chromosomal Locations for CCDS 40705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 80067524 80067572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80087430 80087523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80089849 80089906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80092267 80092412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80093537 80093641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80103694 80103764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80111311 80111453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80113727 80114114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80116532 80116764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80118478 80118642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80121327 80121360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80121864 80122058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80123720 80123946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80126143 80126252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80126336 80126452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80130739 80130858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80132889 80132981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80136458 80136882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80139044 80139147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80140818 80140906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80142083 80142151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80142245 80142395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80143650 80143862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3399 nt):
ATGGCGGCGGGCAAGAGCGGTGGCAGCGCTGGGGCTCTTTTCCTGAAAGCTTTGGATAGATCAGAATCTA
AGAGGGATGGAGGCTTTAAAAATAATTGGAGCTTTGATCATGAAGAAGAAAGTGAAGGAGATGCAGACAA
AGATGGGGCAAATCTACTCAGTGTAGAAGATGAGGATTCTGAAATCTCAAAAGGAAAAAAGTTAAATCGG
AGATCTGAAATTGTTGCTACTAGTTCTGGTGATTTCATCTTGAAGACTTATGTAAGGCGGAGCAAGACTG
ACGGCTTTAAAACTTTGAAAGGCAACCCAATTGGACTTAACATGTTAAGCAACAATAAGAAACTGAGTGA
AAGCACCGCAGGCACAGCATTATGTTCTGGAACTGTGGTTCATGGGAGGCGCTTCCATCATGCTCACTCA
CAGACGCCAGGCATCAGAACAGCGGCTCAGAGGAAAGAATACCCACCTTATGTCCACAAAGCTGAAAACA
GCCCTGTAATGCTAAGTCATGGCCAAGGTGGAGACCATATAATGAAGAAAACTGAAGAGTCAGAATCATA
TGTAGAGTCTGAGATTAAGAGGAAAGTCCAGCAGAAGCGGCACTGTAGCACTTACCAGCTTTCTCCTCTG
TCCCCTGCCTCAAAGAAGTGTTTGACCCATTTAGAGGTTTCTGAACAGCGTGAATATTGCCCAAAATGTG
GAAAAGAAAAAGAAAATCAGACCAAATGCCAAAGTTGTGGTATTGTTTTTCATAATGATTTGCAAAGAAA
TTGCCGACAAGCCGTAACTTTGAATGAACCTACTGGACCATTGCTAAGAACATCAATTCATCAGAACTCT
GGAGGACAGAAATCACAAAACACAGGACTAACAGCTAAGAAATTTTATGGGAACAGTGTGGATAAGATTC
CAATTGATATTTTGGTCACCTGTGATGATAGCAGACATAATTACATACAGACAAATGGGAAAGTCATTTT
ACCTGGAGGAAAAATACCTAAACTCACAAACCCAAAAGAGCGAAAGATAAGCGTGTCAGATTTAAACGAT
CCAATCATTTTGTCTAGTGATGATGATGACGACGACGACGATAGGACTAAGAGAAGAGAGAGCACGTCCC
CGAAGCCTGCCGACTCAGCATGCTCCTCACCAGTACCATCTACGGGAAAAGTTGAAGCTGCACTAAATGC
AGATGCCTGTAGAGCAGAGCAGGAACCCAGAAGCAGTCCAGCAGAGCCTGAGTTAAATACCATTGTCATA
CCACGAAAAGCAAGAATGAAGGACCAGCTTGGTAATTCCATCAGCACACCTTTAAAACGTCGTAAAGTAA
ACAGTCATGCAGCTTTTATTCACCCTATGTCTTTAAGTTGCCAAAACTTTGAAAGTGTCATTTTAAACTG
CCGAAGTATACGAGTTGGAACACTCTTCCGACTGTTGGTAGAGCCTGTAATTTTTTCTTTAGAGTCAATC
ACGATACATCTAGATGGACCAGAAAGTGATCCTGTAGACATTATTTTAAATACCTCTGATCTAACTAAAT
GTGAATGGTGTAATGTCCGGAAATTACCAGTAGTGTTTCTCCAGGCAATACCAGCAGTTTACCAGAAGCT
GAGCATGCAGCTACAGATGAGTAAAGAAGATAAAGTTTGGAATGATTGTAAAGGAATAAACAGGATAACA
AGTTTAGAAGAACAGTACATTATTTTAATTTTTCAAACTGGCCTTGATCATCAGGCAGAGGTGGTCTTTG
AAAGTATCATTACTGACATTGGTATAAGGAATAATGTTCCCAACTTTTTTGCAAAAATTCTTTTTGACGA
AGCCAATAGCAGACTTGTTGCCTGTACAAGAAGCTATGAAGAGAGCATCAAAGGAAACTGCGCGCAAAAA
GAGAACAAAGTGAAAACTGTGTCGTTTGAATCTAAAATACAACTTAGAAGCAAACAAGAATTGCAGTTTT
TTGATGATGACGAAGAAGCTGGGGAGAGCCATACAATCTTCATTGGCCCTGTAGAAAAATTGATAGTATA
CCCACCACCTCCAGCTAAGGGAGGCATTTCTGTTACTAATGAGGACCTGCACTGTCTAAGTGAAGGAGAG
TTTTTAAATGATGTTATTATCGACTTTTATTTGAAATACTTGGTGCTTGAAAAACTGAAGAAAGAAGACG
CTGACCGAATTCATATATTTAGTTCTTTTTTCTATAAACGCCTTAATCAGAGAGAGAGGAGAAATCCTGA
GACAACTAATCTGTCGATACAACAAAAACGGCATGGGAGAGTAAAAACGTGGACACGGCATGTAGATATT
TTTGAGAAGGACTTTATTTTTGTACCCCTTAATGAAGCTGCACATTGGTTTTTGGCTGTTGTTTGTTTCC
CTGGTTTGGAAAAACCAAAATATGAACCTAATCCTCATTACCATGAAAATGCAGTCATGCAAAAAACTCC
AAGTGCAGAGGACAGTTGTGTTTCTTCTGCCAGTGAGATGGGTGCTTGTTCACAGAACTCTGCTGCCAAG
CCTGTGATCAAGAAGATGTTAAATAGAAAACATTGCTTAGCTGTGACTGATTCGAGTGCTGCACAGGAAG
AAAGTGAGCCTTGTTACCGGAGAAACGCATACAGTGTAAAGTGTAGTATGAAAAAAAAAAATCATGCTAT
CAATGAAAATGAAGAACCAAGTAACGGAGAATCTACGTGCCAGGACATTTGTGATAGAACCCAAAGTGAG
AATGGCCTCCGGGATGAATGCTTCAGTTCTGTACATCATCCAGATGCCTTAAGCAAAATCAGACTAAACT
ACGGTGATCAGTCAGCAGACGGTGGGAAGCTGCTTGAAGATGAGCTCATTGACTTCTCAGAGGATCAGGA
TGACCCGGATGATAGCAGTGATGACGGACTCCTTGCTGATGAAAACTACAGTTCAGAAATAGGACAGTGG
CATTTAAAGCCTACTGTCTGTAAACAACCTTGTATCCTCCTTATGGACTCACTCAGAGGCCCTTCTCGTT
CAAATGTTGTCAAAATTCTAAGAGAGTATTTAGAAGTGGAATGGGAGGTGAAAAAAGGAAGCAAAAGAAG
TTTTTCCAAAGATGTTATGAAAGGGTCCAACCCAAAAGTCCCACAACAGAACAACTTCAGTGACTGTGGT
GTCTATGTGCTGCAGTATGTAGAGAGCTTTTTTGAGAATCCAGTACTAAATTTTGAGCTCCCTATGAATT
TGATGAACTGGTTTCCTCCCCCCAGAATGAAAACAAAAAGAGAAGAAATCCGAAACATAATTTTGAAGCT
ACAGGAATCACAGAGTAAAGACAAGAAGCTGCTGAAGGACTCCTTAGCAGAGACGTCCTTAGGGGACGGA
GCAGAGCAGTACGCCAGCGCCAGCGGTGGCTCAGAGTGA

Translation (1132 aa):
MAAGKSGGSAGALFLKALDRSESKRDGGFKNNWSFDHEEESEGDADKDGANLLSVEDEDSEISKGKKLNR
RSEIVATSSGDFILKTYVRRSKTDGFKTLKGNPIGLNMLSNNKKLSESTAGTALCSGTVVHGRRFHHAHS
QTPGIRTAAQRKEYPPYVHKAENSPVMLSHGQGGDHIMKKTEESESYVESEIKRKVQQKRHCSTYQLSPL
SPASKKCLTHLEVSEQREYCPKCGKEKENQTKCQSCGIVFHNDLQRNCRQAVTLNEPTGPLLRTSIHQNS
GGQKSQNTGLTAKKFYGNSVDKIPIDILVTCDDSRHNYIQTNGKVILPGGKIPKLTNPKERKISVSDLND
PIILSSDDDDDDDDRTKRRESTSPKPADSACSSPVPSTGKVEAALNADACRAEQEPRSSPAEPELNTIVI
PRKARMKDQLGNSISTPLKRRKVNSHAAFIHPMSLSCQNFESVILNCRSIRVGTLFRLLVEPVIFSLESI
TIHLDGPESDPVDIILNTSDLTKCEWCNVRKLPVVFLQAIPAVYQKLSMQLQMSKEDKVWNDCKGINRIT
SLEEQYIILIFQTGLDHQAEVVFESIITDIGIRNNVPNFFAKILFDEANSRLVACTRSYEESIKGNCAQK
ENKVKTVSFESKIQLRSKQELQFFDDDEEAGESHTIFIGPVEKLIVYPPPPAKGGISVTNEDLHCLSEGE
FLNDVIIDFYLKYLVLEKLKKEDADRIHIFSSFFYKRLNQRERRNPETTNLSIQQKRHGRVKTWTRHVDI
FEKDFIFVPLNEAAHWFLAVVCFPGLEKPKYEPNPHYHENAVMQKTPSAEDSCVSSASEMGACSQNSAAK
PVIKKMLNRKHCLAVTDSSAAQEESEPCYRRNAYSVKCSMKKKNHAINENEEPSNGESTCQDICDRTQSE
NGLRDECFSSVHHPDALSKIRLNYGDQSADGGKLLEDELIDFSEDQDDPDDSSDDGLLADENYSSEIGQW
HLKPTVCKQPCILLMDSLRGPSRSNVVKILREYLEVEWEVKKGSKRSFSKDVMKGSNPKVPQQNNFSDCG
VYVLQYVESFFENPVLNFELPMNLMNWFPPPRMKTKREEIRNIILKLQESQSKDKKLLKDSLAETSLGDG
AEQYASASGGSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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