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Report for CCDS40687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40687.1 Public Mus musculus 9 Pigb 23 108 98 CCDS HistoryNCBI Gene:55981Re-query CCDS DB by CCDS ID:40687.1Re-query CCDS DB by GeneID:55981See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098566.4 ENSMUSP00000096165.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098566.4Link to Ensembl Protein Viewer:ENSMUSP00000096165.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098566Re-query CCDS DB by Protein ID:ENSMUSP00000096165
Original member Current member EBI ENSMUST00000183746.7 ENSMUSP00000138885.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183746.7Link to Ensembl Protein Viewer:ENSMUSP00000138885.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183746Re-query CCDS DB by Protein ID:ENSMUSP00000138885
Original member Current member EBI ENSMUST00000184389.7 ENSMUSP00000139076.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184389.7Link to Ensembl Protein Viewer:ENSMUSP00000139076.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184389Re-query CCDS DB by Protein ID:ENSMUSP00000139076
Original member Current member EBI ENSMUST00000184035.7 ENSMUSP00000139269.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184035.7Link to Ensembl Protein Viewer:ENSMUSP00000139269.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184035Re-query CCDS DB by Protein ID:ENSMUSP00000139269
Original member NCBI NM_018889.3 NP_061377.2 Updated not alive Link to Nucleotide Sequence:NM_018889.3Link to Protein Sequence:NP_061377.2Re-query CCDS DB by Nucleotide ID:NM_018889Re-query CCDS DB by Protein ID:NP_061377
Current member NCBI NM_018889.4 NP_061377.2 Accepted alive Link to Nucleotide Sequence:NM_018889.4Link to Protein Sequence:NP_061377.2Re-query CCDS DB by Nucleotide ID:NM_018889Re-query CCDS DB by Protein ID:NP_061377Link to BLAST:NP_061377.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061377.2 542 Q9JJQ0 542 100% 0 0

Chromosomal Locations for CCDS 40687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 73016152 73016295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73017391 73017571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73017870 73018083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73021286 73021350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73022275 73022486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73023229 73023280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73029566 73029706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73032053 73032183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73034487 73034591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73036704 73036821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73038623 73038758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73039462 73039591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGGAGTCCCAGGCCGCCGACTATAACCCGGCCTCCCGCAATCTCCACGGCAGCTCGGGAGAAATGAAGC
TGCGGAGGAGGAAGTCCAGGCAGTACGTGAGCGCGCAGGAGAAACGCTCTCCGCGCCGTGGTCTTCTTGG
AGAAAACACTTACCTGGTCTTGTTTACCATCGCTCTGCGAATACTTAACTGCTTCTTAGTGCAGACAAGC
TTTGTTCCTGATGAATACTGGCAGTCCCTCGAAGTTGCACACCGCATGGTTTTCAGTTATGGTTATTTGA
CCTGGGAATGGACGGAGCGATTGAGAGGCTACACTTACCCCCTCATCTTCGCCAGTATTTACAAGGTTCT
GCATCTTCTGGGGAAAGACAGTGTTCAATTCCTGATCTGGATTCCCAGACTTGGCCAAGCTCTTCTGTCT
GCTGTAGCGGATATAAGGCTCTACTCCCTCCTGAAGCAGCTGGAAAACCAGGAAGTGGCACAATGGGTGT
TCCTCTGCCAGCTGTGCTCCTGGTTCACATGGTACTGCTGCACACGGACCCTCACGAACACCATGGAGAC
CTCCCTCACTGCCCTCGCCCTTTTCTACTATCCTCTGGAAGGCTCGAGGTCCGTGAACAGCGTCAAGTAC
TCGCTCCTGGTGGCACTTGCTTGTGTGGTCCGCCCCACAGCTCTTATCCCATGGGTGCCGCTGCTCTTCA
GACATTTCTACCAAGAACAGAGAAAGCTCCATCTGACTCTGCATCATTTTTTACCTGTAGGATTTATAAC
CTTCAGTTTGTCTCTGATAATTGACCGTATCTTTTTTGGCCAATGGACGCTGGTCCAATTAAATTTCTTG
AAATTTAACGTGCTGCAGAACCTAGGGACGTTTTATGGCTCCCATCCATGGCACTGGTACCTCAGTCAAG
GGTTCCCAGTTGTCCTGGGGACCCACTTACCTTTCTTCATTCACGGTTGCTTCCTAGCCCCAAGGAGGCT
CCACATACTGCTGCTGACCGTGCTGTGGACACTGCTGGTATACAGCATGTTGGGCCACAAAGAATTCAGG
TTTATCTATCCAGTTTTACCATTCTGCATGGTGTTCTGTGGTTACTCACTAGCCCACCTGAAGACATGGA
GGAAGGCAGCCCTGAGCTTCCTGCTCTTGTCAAATGTGCCACTGGCATTCTACACTGGCCTAGTTCATCA
GAGAGGCACCCTGGATGTCATGAATCACATTCAGAAAGTCTGCCCCCGAGGTCCTGACCCAGCTTCGGCC
TCAGTATTCATAATGATGCCCTGCCACTCCACGCCTTACTACAGCCATGTTCACTGCCCACTGTCCATGC
GGTTTCTCCAGTGTCCCCCAGACTTGACTGGAAAAACTCAGTATCTTGATGAAGCAGATATGTTCTACTT
AAACCCCTTAAGATGGTTACAACAAGAATTTCACAGCAATGCGTCACTCCCCACTCACTTGGTCACCTTC
AATGTTCTGGAGAAGGAGATCAATACCTTCCTCACCTCAGGGAACTACGAGAGGGCCGCTACATTCTTCC
ACACTCACTGGCCAGAGCGCCGAACTGGAAGTCACATACACGTCTACGAGCGAAGGTTACCCGGCAGGGT
CAACACAGGAGGGAACTGA

Translation (542 aa):
MESQAADYNPASRNLHGSSGEMKLRRRKSRQYVSAQEKRSPRRGLLGENTYLVLFTIALRILNCFLVQTS
FVPDEYWQSLEVAHRMVFSYGYLTWEWTERLRGYTYPLIFASIYKVLHLLGKDSVQFLIWIPRLGQALLS
AVADIRLYSLLKQLENQEVAQWVFLCQLCSWFTWYCCTRTLTNTMETSLTALALFYYPLEGSRSVNSVKY
SLLVALACVVRPTALIPWVPLLFRHFYQEQRKLHLTLHHFLPVGFITFSLSLIIDRIFFGQWTLVQLNFL
KFNVLQNLGTFYGSHPWHWYLSQGFPVVLGTHLPFFIHGCFLAPRRLHILLLTVLWTLLVYSMLGHKEFR
FIYPVLPFCMVFCGYSLAHLKTWRKAALSFLLLSNVPLAFYTGLVHQRGTLDVMNHIQKVCPRGPDPASA
SVFIMMPCHSTPYYSHVHCPLSMRFLQCPPDLTGKTQYLDEADMFYLNPLRWLQQEFHSNASLPTHLVTF
NVLEKEINTFLTSGNYERAATFFHTHWPERRTGSHIHVYERRLPGRVNTGGN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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