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Report for CCDS4050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4050.1 Public Homo sapiens 5 ZFYVE16 24 110 108 CCDS HistoryNCBI Gene:9765Re-query CCDS DB by CCDS ID:4050.1Re-query CCDS DB by GeneID:9765See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338008.9 ENSP00000337159.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338008.9Link to Ensembl Protein Viewer:ENSP00000337159.5Re-query CCDS DB by Nucleotide ID:ENST00000338008Re-query CCDS DB by Protein ID:ENSP00000337159
Original member Current member EBI ENST00000510158.5 ENSP00000423663.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510158.5Link to Ensembl Protein Viewer:ENSP00000423663.1Re-query CCDS DB by Nucleotide ID:ENST00000510158Re-query CCDS DB by Protein ID:ENSP00000423663
Original member Current member EBI ENST00000505560.5 ENSP00000426848.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000505560.5Link to Ensembl Protein Viewer:ENSP00000426848.1Re-query CCDS DB by Nucleotide ID:ENST00000505560Re-query CCDS DB by Protein ID:ENSP00000426848
Original member Current member NCBI NM_001105251.4 NP_001098721.2 Accepted alive Link to Nucleotide Sequence:NM_001105251.4Link to Protein Sequence:NP_001098721.2Re-query CCDS DB by Nucleotide ID:NM_001105251Re-query CCDS DB by Protein ID:NP_001098721Link to BLAST:NP_001098721.2
Original member Current member NCBI NM_001284236.3 NP_001271165.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001284236.3Link to Protein Sequence:NP_001271165.2Re-query CCDS DB by Nucleotide ID:NM_001284236Re-query CCDS DB by Protein ID:NP_001271165Link to BLAST:NP_001271165.2
Original member Current member NCBI NM_001349434.2 NP_001336363.2 Accepted alive Link to Nucleotide Sequence:NM_001349434.2Link to Protein Sequence:NP_001336363.2Re-query CCDS DB by Nucleotide ID:NM_001349434Re-query CCDS DB by Protein ID:NP_001336363Link to BLAST:NP_001336363.2
Original member Current member NCBI NM_014733.6 NP_055548.4 Accepted alive Link to Nucleotide Sequence:NM_014733.6Link to Protein Sequence:NP_055548.4Re-query CCDS DB by Nucleotide ID:NM_014733Re-query CCDS DB by Protein ID:NP_055548Link to BLAST:NP_055548.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098721.2 1539 Q7Z3T8-1 1539 100% 0 0
NP_001271165.2 1539 Q7Z3T8-1 1539 100% 0 0
NP_001336363.2 1539 Q7Z3T8-1 1539 100% 0 0
NP_055548.4 1539 Q7Z3T8-1 1539 100% 0 0

Chromosomal Locations for CCDS 4050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 80434148 80434217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80436756 80439007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80439936 80440032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80443123 80443284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80445263 80445405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80448026 80448404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80449591 80449713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80450431 80450586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80451485 80451709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80455692 80455774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80456461 80456565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80456945 80457092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80459414 80459494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80472761 80472923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80473754 80473859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80474663 80474830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80477219 80477377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4620 nt):
ATGGACAGTTATTTTAAAGCAGCTGTCAGTGACTTGGACAAACTCCTTGATGATTTTGAACAGAACCCAG
ATGAACAAGATTATCTCCAAGATGTACAAAATGCATATGATTCTAACCACTGCTCAGTTTCTTCAGAGTT
GGCTTCCTCACAGCGAACTTCATTGCTCCCAAAAGACCAAGAGTGCGTTAATAGTTGTGCCTCATCAGAA
ACAAGCTATGGAACAAATGAGAGTTCCCTGAATGAAAAAACACTCAAGGGACTTACTTCTATACAAAATG
AAAAAAATGTAACAGGACTTGATCTTCTTTCTTCTGTGGATGGTGGTACTTCAGATGAAATCCAGCCGTT
ATATATGGGACGATGTAGTAAACCTATCTGTGATCTGATAAGTGACATGGGTAACTTAGTTCATGCAACC
AATAGTGAAGAAGATATTAAAAAATTATTGCCAGATGATTTTAAGTCTAATGCAGATTCCTTGATTGGAT
TGGATTTATCTTCAGTGTCAGATACTCCCTGTGTTTCTTCAACAGACCATGATAGTGATACTGTCAGAGA
ACAACAGAATGATATCAGTTCTGAATTACAAAATAGAGAAATCGGAGGAATCAAAGAATTGGGTATAAAA
GTAGATACAACACTTTCAGATTCCTATAATTACAGTGGAACAGAAAATTTAAAAGATAAAAAGATCTTTA
ATCAGTTAGAATCAATTGTTGATTTTAACATGTCATCTGCTTTGACTCGACAAAGTTCCAAAATGTTTCA
TGCCAAAGACAAGCTACAACACAAGAGCCAGCCATGTGGATTACTAAAAGATGTTGGCTTAGTAAAAGAG
GAAGTAGATGTGGCAGTCATAACTGCCGCAGAATGTTTAAAAGAAGAGGGCAAGACAAGTGCTTTGACCT
GCAGCCTTCCGAAAAATGAAGATTTATGCTTAAATGATTCAAATTCAAGAGATGAAAATTTCAAATTACC
TGACTTTTCCTTTCAGGAAGATAAGACTGTTATAAAACAATCTGCACAAGAAGACTCAAAAAGTTTAGAC
CTTAAGGATAATGATGTAATCCAAGATTCCTCTTCAGCTTTACATGTTTCCAGTAAAGATGTGCCGTCCT
CATTGTCCTGTCTTCCTGCGTCTGGGTCTATGTGTGGATCATTAATTGAAAGTAAAGCACGGGGTGATTT
TTTACCTCAGCATGAACATAAAGATAATATACAAGATGCAGTGACTATACATGAAGAAATACAGAACAGT
GTTGTTCTAGGTGGGGAACCATTCAAAGAGAATGATCTTTTGAAACAGGAAAAATGTAAAAGCATACTCC
TTCAGTCATTAATTGAAGGGATGGAAGACAGAAAGATAGATCCTGACCAGACAGTAATCAGAGCTGAGTC
TTTGGATGGTGGTGACACCAGTTCTACAGTTGTAGAATCTCAAGAGGGGCTTTCTGGCACTCATGTCCCA
GAGTCTTCTGATTGTTGTGAAGGTTTTATTAATACTTTTTCAAGCAATGATATGGATGGGCAAGACTTAG
ATTACTTTAATATTGATGAAGGCGCAAAAAGTGGCCCACTAATTAGTGATGCTGAACTTGATGCCTTTCT
GACAGAACAGTATCTTCAGACCACTAACATAAAGTCTTTTGAAGAAAATGTAAATGACTCTAAATCGCAA
ATGAATCAGATAGATATGAAAGGCTTAGATGATGGAAACATCAATAATATATATTTCAATGCAGAAGCAG
GAGCTATTGGGGAAAGTCATGGTATTAATATAATTTGTGAAATAGTTGATAAACAAAATACAATAGAAAA
TGGCCTTTCTTTAGGAGAAAAAAGCACTATTCCAGTTCAACAAGGGTTACCTACCAGTAAGTCTGAGATT
ACAAATCAATTATCGGTCTCTGATATTAACAGTCAATCTGTTGGAGGGGCCAGACCTAAGCAATTGTTTA
GCCTTCCATCAAGAACAAGGAGTTCAAAGGACCTGAATAAGCCAGATGTTCCAGATACAATAGAAAGTGA
ACCCAGCACAGCAGATACCGTTGTTCCAATCACTTGTGCTATAGATTCTACAGCTGATCCACAGGTTAGC
TTCAACTCTAATTACATTGATATAGAAAGTAATTCTGAAGGTGGATCTAGTTTCGTAACTGCAAATGAAG
ATTCTGTACCTGAAAACACTTGCAAAGAAGGCTTGGTTTTGGGCCAGAAACAGCCTACTTGGGTTCCTGA
TTCAGAAGCTCCAAACTGTATGAACTGCCAAGTCAAATTTACTTTTACCAAACGGCGACACCATTGCCGA
GCATGTGGGAAAGTATTTTGTGGTGTCTGTTGTAATAGGAAGTGTAAACTGCAATATCTAGAAAAGGAAG
CAAGAGTATGTGTAGTCTGCTATGAAACTATTAGTAAAGCTCAGGCATTTGAAAGGATGATGAGTCCAAC
TGGTTCTAATCTTAAGTCTAATCATTCTGATGAATGTACTACTGTCCAGCCTCCTCAGGAGAACCAAACA
TCCAGTATACCTTCACCAGCAACTTTGCCAGTCTCAGCACTTAAACAACCAGGTGTTGAAGGACTATGTT
CCAAAGAACAGAAGAGAGTATGGTTTGCAGATGGTATATTGCCCAATGGTGAAGTTGCAGATACAACAAA
ATTATCATCTGGAAGTAAAAGATGTTCTGAAGACTTTAGTCCTCTCTCACCTGATGTGCCTATGACAGTA
AACACAGTGGATCATTCCCATTCTACTACAGTGGAAAAGCCAAACAATGAGACAGGAGATATTACAAGAA
ATGAGATAATTCAGAGTCCTATTTCTCAGGTTCCATCAGTGGAAAAATTGTCTATGAACACAGGAAATGA
GGGGTTACCTACTTCTGGTTCATTTACACTAGATGATGATGTTTTTGCAGAAACTGAAGAACCATCTAGT
CCTACTGGTGTCTTAGTTAACAGCAATTTACCTATTGCTAGTATTTCAGATTATAGGTTACTGTGTGATA
TTAACAAGTATGTCTGCAATAAGATTAGTCTTCTACCTAATGATGAGGACAGTTTGCCCCCACTTCTGGT
TGCATCTGGAGAAAAGGGATCAGTGCCTGTAGTAGAAGAACATCCATCTCATGAGCAGATCATTTTGCTT
CTTGAAGGTGAAAGCTTTCATCCTGTTACATTTGTCCTAAATGCTAATCTACTCGTGAATGTCAAATTCA
TATTTTATTCCTCAGACAAATATTGGTACTTTTCAACCAATGGATTGCATGGCTTGGGACAGGCAGAAAT
TATTATTCTATTGTTATGTTTGCCAAATGAAGATACTATTCCTAAGGACATCTTCAGACTATTTATCACC
ATATATAAGGATGCTCTAAAAGGAAAATACATAGAAAACTTGGACAATATTACCTTTACTGAGAGTTTTC
TCAGTAGCAAGGATCACGGAGGATTCCTGTTTATTACACCTACTTTTCAGAAACTTGATGATCTCTCATT
ACCAAGTAATCCTTTTCTTTGTGGAATTCTTATCCAGAAGCTTGAGATTCCCTGGGCAAAGGTTTTTCCT
ATGCGTTTAATGTTGAGATTGGGTGCAGAATATAAAGCATATCCTGCTCCTCTAACAAGCATCAGAGGCC
GAAAACCTCTTTTTGGAGAAATAGGACACACTATTATGAACTTACTTGTTGACCTTCGAAATTACCAGTA
TACCTTGCATAATATAGATCAACTGTTGATTCATATGGAAATGGGAAAAAGCTGCATAAAAATACCACGG
AAAAAGTACAGTGATGTAATGAAAGTACTAAATTCTTCCAATGAGCATGTCATTAGCATTGGAGCAAGTT
TCAGTACAGAAGCAGATTCTCATCTAGTCTGTATACAGAATGATGGAATTTATGAAACACAGGCCAACAG
TGCCACTGGCCATCCTAGAAAAGTGACAGGTGCAAGTTTTGTGGTATTCAATGGAGCTCTAAAAACATCT
TCAGGATTTCTTGCTAAGTCCAGCATAGTTGAAGATGGCTTAATGGTACAAATAACTCCAGAGACCATGA
ATGGCTTGCGGCTAGCTTTACGAGAACAGAAAGACTTTAAAATTACATGTGGGAAAGTTGATGCAGTAGA
CCTGAGAGAATACGTGGATATCTGCTGGGTAGATGCTGAAGAAAAAGGAAACAAAGGAGTTATCAGTTCA
GTGGATGGAATATCATTACAAGGATTTCCAAGTGAAAAAATAAAACTGGAAGCAGATTTTGAAACCGATG
AGAAGATTGTAAAATGTACCGAGGTGTTCTACTTTCTAAAGGACCAGGATTTATCTATTTTATCAACTTC
TTATCAGTTTGCAAAAGAAATAGCCATGGCTTGTAGTGCTGCGCTGTGCCCTCACCTGAAAACTCTAAAA
AGTAATGGGATGAATAAAATTGGACTCAGAGTTTCCATTGACACTGATATGGTTGAATTTCAGGCAGGAT
CTGAAGGCCAACTTCTGCCTCAGCATTATCTAAATGATCTTGATAGTGCTCTGATACCTGTGATCCATGG
TGGGACCTCCAACTCTAGTTTACCATTAGAAATAGAATTAGTGTTTTTCATTATAGAACATCTTTTTTAG

Translation (1539 aa):
MDSYFKAAVSDLDKLLDDFEQNPDEQDYLQDVQNAYDSNHCSVSSELASSQRTSLLPKDQECVNSCASSE
TSYGTNESSLNEKTLKGLTSIQNEKNVTGLDLLSSVDGGTSDEIQPLYMGRCSKPICDLISDMGNLVHAT
NSEEDIKKLLPDDFKSNADSLIGLDLSSVSDTPCVSSTDHDSDTVREQQNDISSELQNREIGGIKELGIK
VDTTLSDSYNYSGTENLKDKKIFNQLESIVDFNMSSALTRQSSKMFHAKDKLQHKSQPCGLLKDVGLVKE
EVDVAVITAAECLKEEGKTSALTCSLPKNEDLCLNDSNSRDENFKLPDFSFQEDKTVIKQSAQEDSKSLD
LKDNDVIQDSSSALHVSSKDVPSSLSCLPASGSMCGSLIESKARGDFLPQHEHKDNIQDAVTIHEEIQNS
VVLGGEPFKENDLLKQEKCKSILLQSLIEGMEDRKIDPDQTVIRAESLDGGDTSSTVVESQEGLSGTHVP
ESSDCCEGFINTFSSNDMDGQDLDYFNIDEGAKSGPLISDAELDAFLTEQYLQTTNIKSFEENVNDSKSQ
MNQIDMKGLDDGNINNIYFNAEAGAIGESHGINIICEIVDKQNTIENGLSLGEKSTIPVQQGLPTSKSEI
TNQLSVSDINSQSVGGARPKQLFSLPSRTRSSKDLNKPDVPDTIESEPSTADTVVPITCAIDSTADPQVS
FNSNYIDIESNSEGGSSFVTANEDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCR
ACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKAQAFERMMSPTGSNLKSNHSDECTTVQPPQENQT
SSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGEVADTTKLSSGSKRCSEDFSPLSPDVPMTV
NTVDHSHSTTVEKPNNETGDITRNEIIQSPISQVPSVEKLSMNTGNEGLPTSGSFTLDDDVFAETEEPSS
PTGVLVNSNLPIASISDYRLLCDINKYVCNKISLLPNDEDSLPPLLVASGEKGSVPVVEEHPSHEQIILL
LEGESFHPVTFVLNANLLVNVKFIFYSSDKYWYFSTNGLHGLGQAEIIILLLCLPNEDTIPKDIFRLFIT
IYKDALKGKYIENLDNITFTESFLSSKDHGGFLFITPTFQKLDDLSLPSNPFLCGILIQKLEIPWAKVFP
MRLMLRLGAEYKAYPAPLTSIRGRKPLFGEIGHTIMNLLVDLRNYQYTLHNIDQLLIHMEMGKSCIKIPR
KKYSDVMKVLNSSNEHVISIGASFSTEADSHLVCIQNDGIYETQANSATGHPRKVTGASFVVFNGALKTS
SGFLAKSSIVEDGLMVQITPETMNGLRLALREQKDFKITCGKVDAVDLREYVDICWVDAEEKGNKGVISS
VDGISLQGFPSEKIKLEADFETDEKIVKCTEVFYFLKDQDLSILSTSYQFAKEIAMACSAALCPHLKTLK
SNGMNKIGLRVSIDTDMVEFQAGSEGQLLPQHYLNDLDSALIPVIHGGTSNSSLPLEIELVFFIIEHLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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