NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40442.1 Public Mus musculus 8 Polr2c 23 108 98 CCDS HistoryNCBI Gene:20021Re-query CCDS DB by CCDS ID:40442.1Re-query CCDS DB by GeneID:20021See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109521.3 ENSMUSP00000105147.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109521.3Link to Ensembl Protein Viewer:ENSMUSP00000105147.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109521Re-query CCDS DB by Protein ID:ENSMUSP00000105147
Original member Current member NCBI NM_009090.5 NP_033116.2 Accepted alive Link to Nucleotide Sequence:NM_009090.5Link to Protein Sequence:NP_033116.2Re-query CCDS DB by Nucleotide ID:NM_009090Re-query CCDS DB by Protein ID:NP_033116Link to BLAST:NP_033116.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033116.2 275 P97760 275 100% 0 0

Chromosomal Locations for CCDS 40442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94857556 94857641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94857747 94857796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94860244 94860312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94860444 94860496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94861711 94861839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94862182 94862233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94862521 94862689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94862810 94862884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94863452 94863596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGCCGTACGCCAACCAGCCAACAGTGCGGATCACGGAACTCACCGAAGAGAACGTCAAGTTCATTATCG
AGAACACGGACCTGGCGGTGGCCAATTCCATTCGGAGGGTCTTCATCGCAGAGGTGCCCATAATAGCCAT
CGACTGGGTTCAGATTGACGCCAACTCCTCGGTCCTTCATGATGAATTCATCGCGCACAGGCTTGGTTTA
ATCCCCCTCACTAGTGATGACATTGTGGACAAGCTGCAGTACTCCCGGGACTGCACATGTGAAGAGTTCT
GCCCTGAGTGTTCTGTGGAGTTCACTCTCGATGTGAGGTGCAATGAAGACCAGACGCGCCATGTCACCTC
CCGAGATCTCATCTCCAACAGCCCCCGGGTTATTCCGGTGACATCTCGGAACCGGGATAACGACCCTAAT
GACTATGTGGAGCAGGATGACATCCTTATTGTCAAGCTGAGGAAGGGGCAGGAGCTGAGACTTCGAGCCT
ATGCCAAGAAGGGCTTTGGCAAGGAACATGCCAAGTGGAACCCTACTGCGGGGGTAGCTTTTGAATACGA
TCCAGACAACGCACTTAGGCATACAGTGTATCCCAAGCCTGAGGAATGGCCCAAGAGTGAGTATTCCGAG
CTGGATGAGGATGAGTCGCAGGCTCCCTACGACCCCAACGGCAAGCCAGAGAGGTTTTACTACAATGTGG
AGTCGTGTGGCTCACTGCGCCCTGAAACCATTGTCCTCTCAGCCCTGTCGGGGCTAAAGAAGAAGCTGAG
TGATTTACAGACTCAGTTAAGCCATGAGATCCAGAGTGACGTGCTCACCATAAACTAG

Translation (275 aa):
MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGL
IPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPN
DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSE
LDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH