NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4039.1 Public Homo sapiens 5 OTP 24 110 108 CCDS HistoryNCBI Gene:23440Re-query CCDS DB by CCDS ID:4039.1Re-query CCDS DB by GeneID:23440See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4039.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306422.5 ENSP00000302814.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306422.5Link to Ensembl Protein Viewer:ENSP00000302814.3Re-query CCDS DB by Nucleotide ID:ENST00000306422Re-query CCDS DB by Protein ID:ENSP00000302814
Original member Current member NCBI NM_032109.3 NP_115485.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032109.3Link to Protein Sequence:NP_115485.1Re-query CCDS DB by Nucleotide ID:NM_032109Re-query CCDS DB by Protein ID:NP_115485Link to BLAST:NP_115485.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115485.1 325 Q5XKR4 325 100% 0 0

Chromosomal Locations for CCDS 4039.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77630264 77630794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77636821 77637230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77638513 77638549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGCTGTCTCATGCCGACCTCCTGGACGCCAGGCTAGGTATGAAAGATGCCGCCGAGCTTCTGGGCCACC
GGGAGGCGGTGAAGTGTAGGCTGGGCGTGGGGGGCTCCGACCCCGGGGGCCATCCGGGGGACCTGGCGCC
CAACTCTGACCCAGTGGAGGGAGCCACTCTGCTGCCCGGGGAGGACATCACCACAGTGGGCTCTACTCCG
GCCTCGCTGGCGGTGAGCGCCAAAGACCCGGACAAGCAGCCCGGGCCCCAGGGCGGCCCGAACCCCAGCC
AAGCCGGCCAGCAGCAGGGCCAACAGAAGCAGAAGCGCCACCGGACGCGCTTCACCCCCGCACAGCTCAA
CGAGTTGGAGAGGAGCTTCGCCAAGACTCACTACCCCGACATCTTTATGCGTGAGGAGCTGGCACTGCGT
ATCGGGCTGACCGAGTCCCGAGTGCAGGTCTGGTTCCAGAACCGACGCGCCAAGTGGAAGAAGCGCAAAA
AGACGACCAACGTGTTCCGTGCGCCCGGCACACTGCTGCCCACGCCAGGCCTGCCTCAGTTCCCGTCGGC
TGCCGCCGCCGCTGCCGCCGCCATGGGCGACAGCCTGTGCTCTTTCCACGCCAACGACACCCGCTGGGCG
GCGGCCGCCATGCCTGGCGTGTCACAGCTGCCTCTGCCGCCGGCGCTGGGCAGGCAGCAGGCCATGGCGC
AGTCGCTGTCCCAGTGCAGCCTGGCGGCCGGTCCGCCGCCCAACTCCATGGGCCTGTCCAACAGCCTGGC
GGGTTCCAACGGCGCGGGGCTGCAGTCGCACCTCTACCAGCCCGCCTTCCCCGGCATGGTGCCCGCCTCC
CTCCCCGGCCCCAGCAACGTCTCCGGTTCGCCCCAGCTCTGCAGCTCCCCGGACAGCAGCGACGTGTGGC
GGGGCACCAGCATCGCCTCCCTCCGCCGCAAGGCGCTAGAGCACACAGTCTCTATGAGCTTCACTTAA

Translation (325 aa):
MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTP
ASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALR
IGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWA
AAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPAS
LPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH