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Report for CCDS40368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40368.1 Public Mus musculus 8 Mef2b 23 108 98 CCDS HistoryNCBI Gene:17259Re-query CCDS DB by CCDS ID:40368.1Re-query CCDS DB by GeneID:17259See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110143.7 ENSMUSP00000105770.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110143.7Link to Ensembl Protein Viewer:ENSMUSP00000105770.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110143Re-query CCDS DB by Protein ID:ENSMUSP00000105770
Original member Current member NCBI NM_001045484.2 NP_001038949.1 Accepted alive Link to Nucleotide Sequence:NM_001045484.2Link to Protein Sequence:NP_001038949.1Re-query CCDS DB by Nucleotide ID:NM_001045484Re-query CCDS DB by Protein ID:NP_001038949Link to BLAST:NP_001038949.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038949.1 339 O55087-2 339 98.8201% 0 4

Chromosomal Locations for CCDS 40368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70164251 70164304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70165048 70165251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70165530 70165664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70166046 70166175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70166293 70166396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70166614 70166698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70166819 70166906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70167066 70167285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGGGAGGAAAAAAATCCAGATCTCACGAATTCTAGACCAAAGGAACAGGCAGGTGACTTTCACCAAGC
GCAAGTTCGGACTGATGAAGAAGGCTTATGAGCTGAGCGTGCTTTGTGACTGCGACATTGCCCTGATCAT
CTTCAACAGCGCGCAACGCCTCTTCCAGTATGCGAGCAGCGACATGGACCGGGTGCTGCTCAAATACACC
GAGTACAGTGAGCCGCACGAGAGCCGCACCAACGCGGATATCCTTCAGACACTGAAGAGGAGGGGCGTGG
GCCTTGATGGGCCCGAGCTGGATATGGAGGAGGGGCCAGAAGGTCCTGGAGAGAAGCTGCTGAGGACACT
GGGGGGTGACAGAGGCTCGGCCTCGCCCCCGCCTCGGATCTATCCCGTGGCCCCCGCAATGTCGGTTTCA
GAGCTGTCCTACCGGGTCCCACCAGCCACTCCAGGCTGTGATCCTGGCGGGCTGGGGGAGGCCCCGTCTG
TCCACAGCCGCCCGCCTCACTTTCGACCCCCGGGCCTGGGACACCCGATCTTCTCTCCAAGCCACCTTGC
GAGCAAGACGCCCCCGCCTCTGTACCTGGCGACTGATGGGCGGAGGCCAGACCTGCCCCCTGGCCTGAGA
AGCCTGTACAGCGGCCTGCAGAGTCCCGGTGCCCCAGGCCCCGCTCTGGGTAGCTTTGCCTTCTTACCAT
CAGGCTCCACAGATTGCAGCCCGGGAGACGCAGCTCAGGGACCCCTGCAACCCTCACCCTGGCCACCAAC
GAGGGACGCTGTAGACCCCGCCCGGCCAGTTGCCCGCAGTCTGTGCAAGGAGGGTCCCCCCAGCCGAGGG
GCCTCCCCTCCGACACCTCCGGTCAGCATCAAGTCTGAGCGACTGTCTCCAGTCACTGGGACCTCTGGCG
ACTTCCCCAGGTCCTTCCCCTACCCGCTGCTCCTTGCCAGGCCCCTTGCAGAGCCACTGCGGCCCTCGGC
CTCCCTGCACCGCTTGACCCCTGACAGCTGGCCACGGTAG

Translation (339 aa):
MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSDMDRVLLKYT
EYSEPHESRTNADILQTLKRRGVGLDGPELDMEEGPEGPGEKLLRTLGGDRGSASPPPRIYPVAPAMSVS
ELSYRVPPATPGCDPGGLGEAPSVHSRPPHFRPPGLGHPIFSPSHLASKTPPPLYLATDGRRPDLPPGLR
SLYSGLQSPGAPGPALGSFAFLPSGSTDCSPGDAAQGPLQPSPWPPTRDAVDPARPVARSLCKEGPPSRG
ASPPTPPVSIKSERLSPVTGTSGDFPRSFPYPLLLARPLAEPLRPSASLHRLTPDSWPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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