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Report for CCDS40350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40350.1 Public Mus musculus 8 Palld 23 108 98 CCDS HistoryNCBI Gene:72333Re-query CCDS DB by CCDS ID:40350.1Re-query CCDS DB by GeneID:72333See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40350.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034057.13 ENSMUSP00000034057.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034057.13Link to Ensembl Protein Viewer:ENSMUSP00000034057.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034057Re-query CCDS DB by Protein ID:ENSMUSP00000034057
Original member Current member NCBI NM_001081390.2 NP_001074859.1 Accepted alive Link to Nucleotide Sequence:NM_001081390.2Link to Protein Sequence:NP_001074859.1Re-query CCDS DB by Nucleotide ID:NM_001081390Re-query CCDS DB by Protein ID:NP_001074859Link to BLAST:NP_001074859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074859.1 1113 Q9ET54-2 1113 100% 0 0

Chromosomal Locations for CCDS 40350.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 61515021 61515034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61515203 61515336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61515869 61516034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61516535 61516742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61522884 61523016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61525068 61525162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61531912 61532061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61533354 61533575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61535686 61535784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61538688 61538823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61684735 61685077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61687330 61687449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61702170 61702193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61703102 61703243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61708993 61709067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61711375 61711480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61712812 61712878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61720516 61720694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61876913 61877841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3342 nt):
ATGTCAGAGACTTCCTCCCACGACTCCTTCTATGACTCCTTATCAGACGTGCAGGAAGAGGGCAAAAGTG
CTGACTTCTTTCCAGGCCTCTCTGCTTTCCTCAGCCAGGAAGAAATAAATAAAAGCCTTGACCTGGCACG
CAGAGCTATAGACAGCTCTGAAACTGAAGATTTTGACTCTGAGAAGGAGATCTCGCAGATTTTCAGCAAG
TCTCCCATAAGCCTCTGCGAAACTCCTTCCCATGAGGAGCCGAAATCAGGCAAGCAGACTTCCTCAGAAC
GACCTCAGGATAGCAGGCGAGCACCTGTCCAGCCTCTAACAGGAGATCAAGCTGAAAGGATCACTTCCCC
AGGTTCAAAGAGAAAACCCGGGGTATCACCCCTGCTGGCCAGCCCCAGCTACATCCGGAGCCTCCGCAAG
GCTGAAAAACGAGGTGCAAAAAATCCCAATCCAAGTTCAAAGCCCAAAACTGCCCAGCAAAGCAAGGCTG
GCCCCCAGAGCCAACTGTGCGACAAGGCGGCTAGTTTCATCGAGGAACTGACCTCCATATTTAGAGAAGC
GGCAAAGCCAAGGAACAGAAGCCCAAATGGTGAGTCCTCATCACCAGACAGTGGGTATCTGTCTCCTAAA
AATCAGCCATCAGCCCTGATGAGTGCCTCAGCCAGTCAGAGCCCCACTGCAGACCAGCTAGATCAACTGG
AGATGGACGCAGAAGTCAAGCAAGCCCAGGGCAGCCTTTGCTACCAGGCCCACCAGGCCTCGGAAGAGAC
CTTGCCACTCGCTCACATCCCGCACCCACAGCCCCAGAAAGCCCGCCACTTGCCAACTGCACCTAGGTTC
ATCCAGAAACTGAGGAGCCAAGAAGTTGCTGAAGGAAGCAGAGTTTATTTGGAGTGTAGAGTCACAGGAA
ACCCAACGCCCAGGGTCAGATGGTTCTGTGAGGGGAAGGAGCTGTACAACAGTCCTGACGTTCAGATCCA
CTGCGAGAGTGGGGAGCTGCACACCTTGGTCATTGCTGAGGCCTTTGAGGACGACACAGGTCGCTACACG
TGTCTGGCTACAAACCCCAGTGGCTCAGACAGCACATCTGCAGAGGTGTTCATTGAAGGAGCCAGTTCAA
CGGACTCTGACAGCGAAAGCTTATCTTTCATATCAAAAGCTGGAGCCATGCCACAAGCTCAGAAGAAAAC
AACGTCCGTTTCCTTAACGATAGGATCCTCAGCTCCGAAAACAGGAGTGACCACAGCTGTGATTCAGCCC
CTATCTGTGCCCGTCCAACAGGCTCACAGCGCTACTTCATATCTCTGCCGACCTGACGGAACCACCATGG
GCTGCCTTCTTCCTGTTTTTACTAAGGAACTACAGAACACAGCAGCCTCCGAGGGCCAGGTGGTGGTGCT
GGAATGCAGAGTCCGAGGGGCACCCCCGCTGCAGGTCCAGTGGTTCCGGCAAGGAAGTGAGATCCAAGAC
TCTCCGGACTTCAGAATTCTCCAGAAAAAACCCAGATCGACAGCTGAACCCGAGGAGATCTGCACCCTTG
TCATTGCTGAGAGTTTCCCTGAAGATGCAGGCATCTTTACCTGCTCAGCCACAAATGACTACGGCTCAGT
GACCAGCACTGCACAGCTTGTTATAACCTCCGCCAACAACGAGAACTGTAGTTACGACTCAACAGGAGAA
CCCAACAGTGATCACTTCCAACACTTTCCACCTCCCCCTCCGATCCTGGAGACAGGCTCCTATGAGCTGG
CATCCCAGAAACCATCTGAAATCCAGCAGGTGAACAGCCCCAATTTAGGATTTAGCATGGCAGCTCTTCA
AATGCAATTCAACACTGCAGAGAGGGAGACCAACGGAGTCCATCCCAGCCATGGAGTCAACGGGCTGATT
AATGGCAAAGCTTATGGCAATAAATCTCCTCCAACACCAACTGCCCTGCTTTCACCCACTAAGGAACCAC
CGCCACTCCTTGCCAAACCCAAACTGGGGTTCCCAAAGAAGTCCAGTAGAACTGCTAGAATTGCCTCTGA
TGAGGAGATTCAAGGCACAAAGGATGCTGTCATCCAAGACCTGGAACGGAAGCTTCGCTTCAAGGAGGAC
CTTCTGAACAATGGCCAACCGAGGCTAACCTATGAGGAAAGAATGGCTCGCCGCCTGCTTGGAGCCGACA
GCGCAAACGTCTTCAACATCCAGGAGCCAGAGGAAACGGCAGCCAATCAGGAGTACAAAGTCTCTAGCTG
CGAGCAGAGGCTGATTAGCGAGATTGAGTACCGGCTGGAGCGCTCCCCTGTGGATGAGTCGGGAGACGAG
GTGCAGGATCCAGATGTGCCTGTGGAGAACGCAACAGCTCCCTTCTTTGAGATGAAGCTGAAACACTACA
AGATCTTTGAGGGGATGCCGGTGACTTTCACGTGTCGAGTGGCTGGGAATCCAAAGCCAAAGATCTATTG
GTTTAAAGATGGGAAGCAGATTTCTCCGAAGAGCGATCACTACACCATTCAGAGAGACCTTGATGGGACC
TGCTCTCTCCACACCACGGCCTCTACCCTAGACGACGATGGGAACTACACCATCATGGCTGCCAACCCTC
AGGGTCGCGTCAGTTGTACAGGAAGGCTAATGGTACAGGCTGTCAACCAAAGAGGCCGCAGTCCCCGCTC
TCCCTCAGGCCATCCTCATGCCAGAAGGCCTCGCTCTCGATCACGGGACAGTGGAGATGAAAACGAGCCC
ATTCAGGAGCGATTCTTCAGACCTCACTTCCTGCAGGCTCCTGGAGACCTGACCGTTCAGGAAGGCAAGC
TCTGCAGGATGGACTGCAAGGTCAGTGGGTTACCAACCCCAGATCTCAGCTGGCAACTAGATGGAAAGCC
CATACGCCCCGACAGTGCTCACAAGATGCTGGTCCGTGAGAATGGGGTCCACTCCCTCATTATAGAGCCA
GTCACGTCCCGGGACGCCGGCATCTACACATGTATTGCCACCAACAGAGCAGGACAGAACTCGTTTAACC
TGGAGCTTGTGGTTGCTGCTAAGGAAGCACACAAGGCCCCTGTGTTTATGGAGAAGCTACAGAACACGGG
GGTTGCTGATGGATACCCAGTGCGGCTGGAATGCCGTGTCTCGGGAGTGCCGCCACCTCAGATATTTTGG
AAGAAAGAAAATGAATCGCTCACTCACAGCACTGAGCGAGTAAGCATGCACCAGGATAATCATGGCTACA
TCTGCCTGCTCATCCAGGGAGCCACAAAGGAAGACGCTGGGTGGTACACTGTGTCCGCCAAGAACGAAGC
AGGCATTGTGTCCTGCACTGCCCGGCTGGATGTCTACATTTCCCGACATTAA

Translation (1113 aa):
MSETSSHDSFYDSLSDVQEEGKSADFFPGLSAFLSQEEINKSLDLARRAIDSSETEDFDSEKEISQIFSK
SPISLCETPSHEEPKSGKQTSSERPQDSRRAPVQPLTGDQAERITSPGSKRKPGVSPLLASPSYIRSLRK
AEKRGAKNPNPSSKPKTAQQSKAGPQSQLCDKAASFIEELTSIFREAAKPRNRSPNGESSSPDSGYLSPK
NQPSALMSASASQSPTADQLDQLEMDAEVKQAQGSLCYQAHQASEETLPLAHIPHPQPQKARHLPTAPRF
IQKLRSQEVAEGSRVYLECRVTGNPTPRVRWFCEGKELYNSPDVQIHCESGELHTLVIAEAFEDDTGRYT
CLATNPSGSDSTSAEVFIEGASSTDSDSESLSFISKAGAMPQAQKKTTSVSLTIGSSAPKTGVTTAVIQP
LSVPVQQAHSATSYLCRPDGTTMGCLLPVFTKELQNTAASEGQVVVLECRVRGAPPLQVQWFRQGSEIQD
SPDFRILQKKPRSTAEPEEICTLVIAESFPEDAGIFTCSATNDYGSVTSTAQLVITSANNENCSYDSTGE
PNSDHFQHFPPPPPILETGSYELASQKPSEIQQVNSPNLGFSMAALQMQFNTAERETNGVHPSHGVNGLI
NGKAYGNKSPPTPTALLSPTKEPPPLLAKPKLGFPKKSSRTARIASDEEIQGTKDAVIQDLERKLRFKED
LLNNGQPRLTYEERMARRLLGADSANVFNIQEPEETAANQEYKVSSCEQRLISEIEYRLERSPVDESGDE
VQDPDVPVENATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT
CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGRSPRSPSGHPHARRPRSRSRDSGDENEP
IQERFFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPIRPDSAHKMLVRENGVHSLIIEP
VTSRDAGIYTCIATNRAGQNSFNLELVVAAKEAHKAPVFMEKLQNTGVADGYPVRLECRVSGVPPPQIFW
KKENESLTHSTERVSMHQDNHGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDVYISRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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