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Report for CCDS40310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40310.1 Public Mus musculus 8 Plpbp 23 108 98 CCDS HistoryNCBI Gene:114863Re-query CCDS DB by CCDS ID:40310.1Re-query CCDS DB by GeneID:114863See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033875.9 ENSMUSP00000033875.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033875.9Link to Ensembl Protein Viewer:ENSMUSP00000033875.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033875Re-query CCDS DB by Protein ID:ENSMUSP00000033875
Original member Current member NCBI NM_054057.4 NP_473398.1 Accepted alive Link to Nucleotide Sequence:NM_054057.4Link to Protein Sequence:NP_473398.1Re-query CCDS DB by Nucleotide ID:NM_054057Re-query CCDS DB by Protein ID:NP_473398Link to BLAST:NP_473398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473398.1 274 Q9Z2Y8 274 100% 0 0

Chromosomal Locations for CCDS 40310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27042615 27042713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27045028 27045135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27045398 27045433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27045924 27045999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27049174 27049308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27051259 27051401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27052236 27052334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27053286 27053414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGTTGAGAGGTGGCAGCATGACGGCGGAGCTGGGAGTCGGGTTCGCGCTGCGGGCCGTGAACGAGCGAG
TCCAGCAGAGTGTGGCGCGGCGGCCGCGGGACCTCCCAGCCATCCAACCCCGGCTCGTTGCGGTCAGCAA
AACAAAACCTGCAGACATGGTGATCGAGGCCTATGGCCACGGCCAGCGCACTTTTGGAGAGAACTATGTT
CAGGAACTACTAGAAAAAGCATCAAACCCTAAGATTCTGTCTTCCTGTCCCGAGATCAAGTGGCACTTCA
TTGGTCATTTACAGAAACAAAACGTCAACAAACTGATGGCCGTCCCCAACCTCTCTATGCTGGAAACCGT
AGACTCGGTGAAGCTGGCAGACAAGGTGAATAGCTCCTGGCAGAAGAAAGGTCCTACAGAACCACTGAAG
GTGATGGTCCAGATTAACACCAGCGGAGAGGACAGTAAACACGGCCTGCTGCCTTCAGAGACCATAGCTG
TCGTGGAACACATAAAGGCCAGTTGTCCCAGCCTGGAGTTCGTGGGTCTCATGACCATAGGAAGCTTTGG
ACATGATCTAAGTCAAGGACCAAACCCAGACTTCCAGAGGCTGCTGACCCTGCGGCGGGAGCTGTGTGAA
AAGCTGGGCATTCCGGTGGAGCAGGTGGAACTTAGCATGGGCATGTCCATGGACTTCCAGCATGCTATTG
AAGTAGGATCTACAAATGTCCGGATAGGGAGCACTATTTTTGGAGAGCGGGACTACTCAAAGAAGCCTGC
CCTAGACAAGACAGCAGACGCGAAGGCCTCAGTACCACTGGTGCAAGGACACTGA

Translation (274 aa):
MLRGGSMTAELGVGFALRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYV
QELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSSWQKKGPTEPLK
VMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCE
KLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDYSKKPALDKTADAKASVPLVQGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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