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Report for CCDS40301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40301.1 Public Mus musculus 8 Htra4 23 108 98 CCDS HistoryNCBI Gene:330723Re-query CCDS DB by CCDS ID:40301.1Re-query CCDS DB by GeneID:330723See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084031.5 ENSMUSP00000081044.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084031.5Link to Ensembl Protein Viewer:ENSMUSP00000081044.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084031Re-query CCDS DB by Protein ID:ENSMUSP00000081044
Original member Current member NCBI NM_001081187.3 NP_001074656.1 Accepted alive Link to Nucleotide Sequence:NM_001081187.3Link to Protein Sequence:NP_001074656.1Re-query CCDS DB by Nucleotide ID:NM_001081187Re-query CCDS DB by Protein ID:NP_001074656Link to BLAST:NP_001074656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074656.1 483 A2RT60 483 100% 0 0

Chromosomal Locations for CCDS 40301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25025569 25025734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25029629 25029724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25030099 25030156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25030512 25030626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25032960 25032992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25033564 25033758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25036989 25037193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25037939 25038038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25038391 25038874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGAGCTTCCAGCGGTTGTGGGCTGTGCGAACACAGTTTCTCCTGCTGTGGTTGCTGCTACCAGCCGTGC
CTGTTCCGTGGGCCGAGGCCAGGAGGTCCAGAGTCTCGCTGCCCTGTCCCGATGCCTGCGATCCCACGCG
CTGCCCGACTCTGCCTACCTGCTCGGCCGGCTTGGCGCCGGTTCCCGATCGCTGCGGCTGCTGCCGAGTG
TGCGCCGCGGCCGAGGGCCAGGAGTGTGGCGGGGCGCGGGGCCGGCCGTGCGCCCCAAGGCTGCGCTGCG
GCGCCCCGTTCTCCCGGGATCCCTCGGGGGGCGCGTGGCTGGGCACCTGCGGCTGCGCGGAGGGTGCTGA
GGATGCGGTAGTGTGCGGCAGCGATGGGCGCACCTACCCCAGCCTATGTGCGCTCCGCAAGGAGAACCGA
GCCGCTCGCCAGCGGGGCGCGCTCCCGGCTGTGCCAGTGCAGAAGGGTGCCTGCGAGGAAGCAGGGACCA
CAAGAGCAGGGCGGCTCCGGAGAAAGTACAACTTCATCGCCGCAGTGGTGGAGAAGGTGGCGCCGTCTGT
GGTCCACTTGCAGCTGTTCCGCAGATCACCTCTCACCAACCAGGAAATCCCTTCCTCCAGCGGCTCTGGG
TTCATAGTGTCTGAGGATGGGCTCATTGTCACCAATGCCCACGTCCTCACCAACCAGCAGAAGATCCAGG
TAGAGCTCCAGAGCGGGGCCCGGTATGAAGCCACCGTCAAAGACATCGACCATAAACTGGACCTTGCACT
GATTAAGATCGAGCCAGATACTGAGCTTCCAGTACTGCTGCTGGGCCGATCCTCTGACCTCCGGGCTGGA
GAGTTTGTGGTAGCTTTGGGCAGCCCATTTTCTCTGCAGAACACCGTGACTGCAGGGATTGTCAGCACCA
CACAGAGAGGCGGCAGAGAGCTGGGACTGAAGAATTCAGACATAGACTATATCCAGACGGATGCCATCAT
TAACCATGGAAATTCTGGGGGTCCGCTGGTGAACTTGGATGGCGACGTGATTGGTATAAACACTCTGAAG
GTGACTGCAGGGATCTCTTTTGCGATCCCCTCTGATCGGATCAGACAGTTCCTGGAAGACTATCATGAGC
GCCAGTTGAAAGGCAAGGCCCCTTTGCAGAAGAAATACCTGGGTCTTCGAATGCTGCCTCTCACTCTGAA
CCTCCTTCAGGAAATGAAGAGGCAAGATCCAGAGTTCCCTGATGTGAGTTCTGGAGTTTTTGTATATGAA
GTGATTCAGGGATCGGCTGCTGCAAGCTCGGGGTTGAGAGACCATGATGTAATTGTCAGCATAAACGGGC
AACCTGTCACCACCACAACTGATGTCATTGAAGCTGTTAAGGACAATGACTTTCTCTCCATCATTGTGCT
TCGAGGAAGTCAAACCTTGTTTCTGACAGTCACACCTGAAATAATCAATTAA

Translation (483 aa):
MSFQRLWAVRTQFLLLWLLLPAVPVPWAEARRSRVSLPCPDACDPTRCPTLPTCSAGLAPVPDRCGCCRV
CAAAEGQECGGARGRPCAPRLRCGAPFSRDPSGGAWLGTCGCAEGAEDAVVCGSDGRTYPSLCALRKENR
AARQRGALPAVPVQKGACEEAGTTRAGRLRRKYNFIAAVVEKVAPSVVHLQLFRRSPLTNQEIPSSSGSG
FIVSEDGLIVTNAHVLTNQQKIQVELQSGARYEATVKDIDHKLDLALIKIEPDTELPVLLLGRSSDLRAG
EFVVALGSPFSLQNTVTAGIVSTTQRGGRELGLKNSDIDYIQTDAIINHGNSGGPLVNLDGDVIGINTLK
VTAGISFAIPSDRIRQFLEDYHERQLKGKAPLQKKYLGLRMLPLTLNLLQEMKRQDPEFPDVSSGVFVYE
VIQGSAAASSGLRDHDVIVSINGQPVTTTTDVIEAVKDNDFLSIIVLRGSQTLFLTVTPEIIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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