NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4023.1 Public Homo sapiens 5 GFM2 24 110 108 CCDS HistoryNCBI Gene:84340Re-query CCDS DB by CCDS ID:4023.1Re-query CCDS DB by GeneID:84340See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4023.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296805.8 ENSP00000296805.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296805.8Link to Ensembl Protein Viewer:ENSP00000296805.3Re-query CCDS DB by Nucleotide ID:ENST00000296805Re-query CCDS DB by Protein ID:ENSP00000296805
Original member Current member EBI ENST00000509430.5 ENSP00000427004.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509430.5Link to Ensembl Protein Viewer:ENSP00000427004.1Re-query CCDS DB by Nucleotide ID:ENST00000509430Re-query CCDS DB by Protein ID:ENSP00000427004
Original member Current member NCBI NM_032380.5 NP_115756.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032380.5Link to Protein Sequence:NP_115756.2Re-query CCDS DB by Nucleotide ID:NM_032380Re-query CCDS DB by Protein ID:NP_115756Link to BLAST:NP_115756.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115756.2 779 Q969S9-1 779 100% 0 0

Chromosomal Locations for CCDS 4023.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 74721655 74721783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74722379 74722561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74725640 74725755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74725941 74726126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74730260 74730398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74733022 74733098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74736796 74736985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74738318 74738417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74738502 74738642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74739989 74740137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74741529 74741609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74745678 74745857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74746105 74746165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74747692 74747780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74750579 74750667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74751368 74751493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74758849 74758946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74759369 74759426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74760902 74760986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74763680 74763742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGTTGACCAACTTGAGGATATTTGCAATGAGTCATCAGACAATACCCAGTGTGTATATTAATAATATAT
GCTGCTATAAAATAAGAGCAAGTTTAAAAAGATTAAAGCCACATGTGCCGCTTGGAAGAAATTGCAGTTC
TCTACCAGGCTTAATAGGAAATGATATCAAATCCCTTCATTCCATCATCAATCCTCCCATAGCTAAAATC
CGTAATATTGGAATTATGGCTCATATTGATGCAGGCAAAACTACCACCACAGAAAGAATATTGTACTATT
CCGGATATACAAGATCACTGGGAGATGTTGATGATGGAGACACAGTGACAGATTTCATGGCCCAAGAGCG
AGAAAGAGGCATTACTATTCAATCAGCTGCTGTTACATTTGATTGGAAAGGTTATAGAGTCAATCTAATT
GATACACCAGGTCATGTGGACTTTACCTTGGAGGTTGAGCGGTGCCTAAGAGTGTTGGATGGTGCAGTGG
CTGTATTTGATGCCTCTGCTGGTGTAGAGGCCCAGACTCTCACAGTATGGAGGCAAGCTGATAAACACAA
TATACCTCGAATCTGTTTTTTAAACAAGATGGACAAAACTGGAGCAAGCTTTAAGTATGCAGTTGAAAGC
ATCAGAGAGAAGTTAAAGGCAAAGCCTTTGCTTTTACAGTTACCAATTGGTGAAGCCAAAACTTTCAAAG
GAGTGGTGGATGTAGTAATGAAAGAAAAACTTCTTTGGAATTGCAATTCAAATGATGGAAAAGACTTTGA
GAGAAAGCCCCTCTTGGAAATGAATGATCCTGAATTGCTGAAGGAAACAACTGAAGCAAGGAATGCCTTA
ATTGAACAAGTTGCAGATTTGGATGATGAATTTGCTGACTTGGTTTTAGAAGAATTTAGTGAGAATTTTG
ATTTGTTACCAGCTGAAAAGCTACAGACTGCAATACATAGAGTGACACTAGCTCAGACAGCAGTGCCTGT
GCTTTGTGGAAGTGCCCTGAAAAACAAAGGGATACAGCCCTTGTTAGATGCTGTTACTATGTACTTACCT
TCACCTGAAGAGCGTAACTATGAATTTCTGCAGTGGTATAAGGATGACTTATGTGCATTGGCATTTAAAG
TTCTCCATGACAAGCAGCGAGGACCACTGGTTTTTATGCGCATTTACTCAGGCACTATAAAACCCCAGTT
GGCCATTCATAATATTAATGGAAACTGCACGGAGAGAATAAGTCGTCTGCTTTTGCCGTTTGCTGACCAA
CATGTAGAAATCCCTTCATTGACTGCTGGTAACATTGCTTTGACTGTTGGGCTTAAACATACTGCCACTG
GAGACACCATTGTCTCATCCAAGTCCAGTGCATTAGCTGCAGCTCGTAGAGCCGAACGGGAGGGAGAAAA
GAAGCACAGACAAAACAATGAAGCAGAGAGACTTTTATTGGCTGGAGTGGAGATTCCAGAACCTGTTTTC
TTCTGTACCATAGAACCCCCATCACTGTCTAAGCAGCCAGATTTGGAACATGCGTTGAAATGTCTTCAGC
GTGAAGATCCCAGTTTGAAAGTGAGGCTAGATCCTGACTCTGGACAAACTGTTCTGTGTGGTATGGGGGA
GTTACATATAGAGATTATTCATGATCGAATCAAGAGGGAATATGGACTGGAGACCTATCTCGGGCCTCTC
CAGGTGGCATATCGAGAGACCATCCTAAACTCAGTTCGTGCCACAGATACCTTAGATAGAACTTTAGGAG
ACAAAAGGCATCTTGTGACTGTAGAAGTGGAAGCAAGGCCAATTGAAACATCATCTGTTATGCCTGTGAT
TGAGTTTGAGTATGCTGAAAGTATCAATGAAGGCCTTTTGAAGGTCTCCCAAGAGGCCATTGAAAATGGA
ATTCACAGCGCATGTCTCCAAGGACCATTGCTTGGATCCCCAATTCAGGATGTAGCAATTACTTTACATT
CCCTGACAATTCATCCTGGCACCTCCACAACTATGATTTCTGCCTGTGTCTCAAGATGCGTGCAAAAGGC
TCTGAAGAAAGCTGATAAGCAAGTTTTGGAGCCTCTGATGAATCTTGAGGTTACAGTAGCTAGAGATTAT
CTCAGCCCTGTCCTGGCAGATCTGGCACAAAGAAGAGGAAACATTCAGGAAATTCAGACTCGCCAGGACA
ACAAAGTTGTTATTGGATTTGTTCCCTTAGCAGAAATTATGGGTTATTCAACTGTGCTTCGAACGCTAAC
ATCAGGCTCAGCTACTTTTGCCTTAGAACTATCTACTTATCAAGCCATGAATCCTCAAGATCAAAATACA
CTGCTCAACCGGAGAAGTGGTTTGACCTAA

Translation (779 aa):
MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLHSIINPPIAKI
RNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVTFDWKGYRVNLI
DTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRICFLNKMDKTGASFKYAVES
IREKLKAKPLLLQLPIGEAKTFKGVVDVVMKEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNAL
IEQVADLDDEFADLVLEEFSENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLP
SPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNINGNCTERISRLLLPFADQ
HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLLAGVEIPEPVF
FCTIEPPSLSKQPDLEHALKCLQREDPSLKVRLDPDSGQTVLCGMGELHIEIIHDRIKREYGLETYLGPL
QVAYRETILNSVRATDTLDRTLGDKRHLVTVEVEARPIETSSVMPVIEFEYAESINEGLLKVSQEAIENG
IHSACLQGPLLGSPIQDVAITLHSLTIHPGTSTTMISACVSRCVQKALKKADKQVLEPLMNLEVTVARDY
LSPVLADLAQRRGNIQEIQTRQDNKVVIGFVPLAEIMGYSTVLRTLTSGSATFALELSTYQAMNPQDQNT
LLNRRSGLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH