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Report for CCDS40223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40223.1 Public Mus musculus 8 Atp11a 23 108 98 CCDS HistoryNCBI Gene:50770Re-query CCDS DB by CCDS ID:40223.1Re-query CCDS DB by GeneID:50770See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091237.11 ENSMUSP00000088779.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091237.11Link to Ensembl Protein Viewer:ENSMUSP00000088779.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091237Re-query CCDS DB by Protein ID:ENSMUSP00000088779
Original member Current member NCBI NM_015804.3 NP_056619.1 Accepted alive Link to Nucleotide Sequence:NM_015804.3Link to Protein Sequence:NP_056619.1Re-query CCDS DB by Nucleotide ID:NM_015804Re-query CCDS DB by Protein ID:NP_056619Link to BLAST:NP_056619.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056619.1 1187 P98197 1187 100% 0 0

Chromosomal Locations for CCDS 40223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 12757314 12757352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12806650 12806772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12812312 12812401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12813075 12813155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12816908 12817015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12820390 12820518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12822613 12822716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12823002 12823052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12825680 12825744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12826325 12826406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12827448 12827598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12828449 12828646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12831085 12831258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12832509 12832678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12834637 12834708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12835161 12835234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12837912 12838015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12842826 12843007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12844404 12844655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12846041 12846218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12847473 12847575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12847740 12847885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12848803 12848862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12849775 12849902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12851037 12851172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12856934 12856999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12857883 12857986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12859314 12859479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12864920 12865147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3564 nt):
ATGGACTGCAGTCTATTGAGGACGCTCGTGCGCAGATACTGTGCAGGGGAAGAGAACTGGGTGGACAGTC
GGACCATCTACGTGGGACACAAGGAGCCCCCTCCGGGTGCAGAGGCCTACATTCCACAGAGATACCCCGA
CAATAGAATCGTCTCCTCCAAGTACACATTCTGGAACTTCATACCCAAGAACTTATTTGAACAGTTCAGA
AGAATAGCCAACTTTTATTTCCTCATCATCTTCCTGGTACAGTTGATCATCGACACACCCACAAGTCCAG
TGACAAGCGGGCTCCCACTCTTCTTCGTCATCACTGTCACGGCCATCAAGCAGGGCTATGAAGACTGGCT
TCGCCACAAGGCCGACAACGCCATGAACCAGTGTCCCGTGCACTTTATCCAGCATGGCAAGCTGGTCCGC
AAGCAGAGTCGGAAGCTGAGGGTTGGGGACATTGTCATGGTGAAGGAAGATGAGACCTTTCCCTGTGACC
TGATCTTTCTCTCCAGCAACCGGGCAGATGGGACATGCCATGTCACTACAGCCAGCTTAGACGGAGAGTC
GAGCCATAAAACTCACTACGCAGTGCAGGATACCAAGGGCTTCCACACAGAGGCGGATGTTGACAGCTTG
CACGCCACGATCGAGTGTGAACAGCCACAGCCTGACCTCTACAAGTTTGTGGGGCGCATCAATGTTTACA
ACGACCTGAACGACCCTGTAGTGAGGCCTTTGGGGTCAGAAAACCTGCTTCTCAGAGGAGCCACACTCAA
AAACACAGAGAAGATCTTTGGTGTGGCTATCTACACAGGCATGGAGACCAAGATGGCCCTGAACTATCAA
TCCAAGTCCCAAAAGAGATCTGCTGTGGAAAAGTCAATGAACACATTCCTGATCGTGTACCTCTGCATCC
TGGTGAGCAAGGCCCTGATCAACACGGTGCTGAAGTACGTGTGGCAGAGTGAGCCCTTCCGAGATGAGCC
ATGGTACAACGAGAAGACCGAATCCGAGCGCCAGAGGAATTTGTTCCTCAGGGCCTTCACCGACTTCCTG
GCCTTCATGGTCCTCTTCAATTACATCATCCCCGTATCCATGTACGTCACCGTGGAGATGCAGAAGTTCC
TCGGCTCCTACTTCATCACCTGGGATGAGGACATGTTTGATGAGGAAATGGGGGAAGGGCCTCTGGTCAA
CACATCTGATCTGAATGAGGAGTTGGGACAGGTGGAATACATCTTCACTGACAAGACCGGCACGCTTACA
GAGAACAACATGGCCTTCAAGGAGTGCTGCATCGAGGGCCATGTCTACGTACCCCATGTCATCTGCAATG
GGCAGGTCCTTCCCGACTCTTCTGGCATTGACATGATCGATTCTTCCCCCGGAGTCTGTGGAAGGGAACG
GGAGGAGCTGTTTTTCAGGGCCATCTGCCTGTGCCACACTGTCCAAGTGAAAGATGACCATTGTGGGGAT
GATGTCGATGGTCCCCAGAAATCTCCAGATGCAAAATCCTGTGTGTACATATCGTCCTCGCCTGATGAGG
TTGCACTGGTCGAAGGCGTGCAGAGGCTTGGATTCACGTACCTGAGGCTGAAGGACAATTACATGGAAAT
ACTGAACAGGGAGAACGACATAGAGAGATTTGAATTGCTAGAAGTGCTGACCTTTGATTCTGTGCGGAGA
AGAATGAGTGTGATTGTAAAGTCTACTACAGGAGAAATTTATCTGTTTTGCAAAGGAGCAGATTCTTCAA
TATTTCCCCGAGTGATAGAAGGCAAAGTAGACCAGGTCCGGTCTAGAGTGGAGCGCAATGCCGTGGAAGG
GCTGCGAACCCTGTGTGTTGCATACAAGAGGCTCGAGCCAGAGCAGTACGAAGATGCTTGCCGACTGCTA
CAGAGTGCCAAAGTGGCGCTTCAGGACCGGGAGAAGAAGCTGGCAGAAGCCTACGAGCAGATAGAGAAGG
ACCTTGTTCTGCTTGGTGCTACGGCTGTTGAGGACAGGCTCCAGGAGAAAGCTGCTGACACAATTGAGGC
ACTACAGAAGGCAGGCATCAAGGTCTGGGTGCTCACCGGGGACAAGATGGAGACAGCATCCGCCACCTGC
TATGCCTGCAAGCTGTTCCGCAGGAGCACGCAGCTGCTGGAGCTGACCACCAAGAAGCTAGAGGAGCAGA
GCCTGCACGATGTGCTCTTCGACCTGAGCAAGACAGTGCTGCGCTGCAGCGGGAGCATGACCAGGGACTC
CTTCTCGGGGCTCTCCACAGATATGCACGACTATGGTTTAATCATCGATGGAGCAGCACTGTCCTTGATA
ATGAAGCCGAGAGAGGACGGGAGCTCCTCGGGCAACTACCGAGAGCTCTTCCTGGAGATCTGCAGGAACT
GCAGTGCTGTGCTGTGCTGCCGGATGGCACCCTTGCAGAAGGCCCAGATCGTTAAGTTAATCAAATTTTC
AAAGGAGCATCCTATTACCTTAGCAATTGGTGATGGTGCAAATGATGTCAGTATGATCCTGGAGGCCCAC
GTGGGCATAGGTGTCATCGGGAAAGAGGGTCGCCAGGCTGCAAGGAACAGCGACTATGCAATACCCAAGT
TTAAACACTTAAAGAAGATGCTTCTTGTTCATGGGCATTTTTATTATATCAGGATATCTGAGCTTGTGCA
ATACTTCTTTTATAAGAACGTCTGCTTCATTTTCCCTCAGTTTTTGTACCAGTTCTTCTGCGGATTTTCA
CAGCAGACTTTGTACGATACTGCGTATCTGACTCTCTACAACATCAGCTTCACTTCCCTCCCGATTCTCC
TGTACAGCCTCATGGAGCAGCACGTGGGCATTGACGTGCTCAAGAGAGACCCGACCCTCTACAGAGACAT
TGCCAAGAATGCGCTGCTGCGCTGGCGGGTGTTCATTTACTGGACGTTTCTCGGCGTTTTTGACGCTTTG
GTATTTTTCTTTGGTGCTTATTTCATATTTGAGAACACAACCGTGACCATCAACGGACAGATGTTTGGGA
ACTGGACCTTCGGGACGCTGGTGTTCACTGTGATGGTGCTCACTGTCACACTGAAGCTCGCACTGGACAC
GCACTACTGGACTTGGATCAACCACTTTGTCATCTGGGGGTCGCTGCTCTTCTACATTGCCTTCTCCCTG
CTCTGGGGAGGGGTTATCTGGCCGTTCCTCAGTTACCAGAGGATGTACTATGTGTTCATATCCATGCTGT
CCAGTGGGCCTGCCTGGCTGGGTATCATACTGCTTGTCACGGTCGGCCTCCTCCCTGACGTCCTCAAGAA
GGTCCTGTGTAGGCAGCTGTGGCCCACGGCAACGGAGAGAACTCAGAACATACAACATCAGGACAGCATT
TCAGAATTCACCCCTCTGGCCTCTTTGCCGAGCTGGGGTGCTCAGGGCAGCAGACTCTTGGCTGCCCAGT
GCAGCTCCCCCTCTGGGAGAGTTGTGTGCTCCAGGTGGGAGAGCGAAGAGTGTCCTGTGCTCCCTCTCCA
CCCAGGCCTTCCTCACAAGGCAAGGTATGGGTGCTGTAGGTCCAGCCTGGAGATGCCCACTTGA

Translation (1187 aa):
MDCSLLRTLVRRYCAGEENWVDSRTIYVGHKEPPPGAEAYIPQRYPDNRIVSSKYTFWNFIPKNLFEQFR
RIANFYFLIIFLVQLIIDTPTSPVTSGLPLFFVITVTAIKQGYEDWLRHKADNAMNQCPVHFIQHGKLVR
KQSRKLRVGDIVMVKEDETFPCDLIFLSSNRADGTCHVTTASLDGESSHKTHYAVQDTKGFHTEADVDSL
HATIECEQPQPDLYKFVGRINVYNDLNDPVVRPLGSENLLLRGATLKNTEKIFGVAIYTGMETKMALNYQ
SKSQKRSAVEKSMNTFLIVYLCILVSKALINTVLKYVWQSEPFRDEPWYNEKTESERQRNLFLRAFTDFL
AFMVLFNYIIPVSMYVTVEMQKFLGSYFITWDEDMFDEEMGEGPLVNTSDLNEELGQVEYIFTDKTGTLT
ENNMAFKECCIEGHVYVPHVICNGQVLPDSSGIDMIDSSPGVCGREREELFFRAICLCHTVQVKDDHCGD
DVDGPQKSPDAKSCVYISSSPDEVALVEGVQRLGFTYLRLKDNYMEILNRENDIERFELLEVLTFDSVRR
RMSVIVKSTTGEIYLFCKGADSSIFPRVIEGKVDQVRSRVERNAVEGLRTLCVAYKRLEPEQYEDACRLL
QSAKVALQDREKKLAEAYEQIEKDLVLLGATAVEDRLQEKAADTIEALQKAGIKVWVLTGDKMETASATC
YACKLFRRSTQLLELTTKKLEEQSLHDVLFDLSKTVLRCSGSMTRDSFSGLSTDMHDYGLIIDGAALSLI
MKPREDGSSSGNYRELFLEICRNCSAVLCCRMAPLQKAQIVKLIKFSKEHPITLAIGDGANDVSMILEAH
VGIGVIGKEGRQAARNSDYAIPKFKHLKKMLLVHGHFYYIRISELVQYFFYKNVCFIFPQFLYQFFCGFS
QQTLYDTAYLTLYNISFTSLPILLYSLMEQHVGIDVLKRDPTLYRDIAKNALLRWRVFIYWTFLGVFDAL
VFFFGAYFIFENTTVTINGQMFGNWTFGTLVFTVMVLTVTLKLALDTHYWTWINHFVIWGSLLFYIAFSL
LWGGVIWPFLSYQRMYYVFISMLSSGPAWLGIILLVTVGLLPDVLKKVLCRQLWPTATERTQNIQHQDSI
SEFTPLASLPSWGAQGSRLLAAQCSSPSGRVVCSRWESEECPVLPLHPGLPHKARYGCCRSSLEMPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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