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Report for CCDS40192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40192.1 Public Mus musculus 7 Tnni2 23 108 98 CCDS HistoryNCBI Gene:21953Re-query CCDS DB by CCDS ID:40192.1Re-query CCDS DB by GeneID:21953See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40192.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105971.7 ENSMUSP00000101591.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105971.7Link to Ensembl Protein Viewer:ENSMUSP00000101591.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105971Re-query CCDS DB by Protein ID:ENSMUSP00000101591
Original member Current member EBI ENSMUST00000149529.7 ENSMUSP00000122733.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149529.7Link to Ensembl Protein Viewer:ENSMUSP00000122733.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149529Re-query CCDS DB by Protein ID:ENSMUSP00000122733
Original member Current member NCBI NM_009405.3 NP_033431.1 Accepted alive Link to Nucleotide Sequence:NM_009405.3Link to Protein Sequence:NP_033431.1Re-query CCDS DB by Nucleotide ID:NM_009405Re-query CCDS DB by Protein ID:NP_033431Link to BLAST:NP_033431.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033431.1 182 P13412 182 100% 0 0

Chromosomal Locations for CCDS 40192.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142442491 142442498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142442691 142442697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142443171 142443212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142443303 142443431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142443571 142443660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142443906 142444082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142444215 142444310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGGGAGATGAGGAGAAGCGCAACAGGGCCATCACGGCCCGGAGACAGCACCTGAAGAGTGTGATGCTCC
AGATAGCGGCCACAGAGCTGGAGAAAGAGGAAAGCCGCCGAGAATCTGAGAAGGAGAACTACCTGTCAGA
ACACTGCCCGCCACTGCACATCCCAGGCTCCATGTCTGAAGTGCAGGAACTCTGCAAACAACTGCATGCG
AAGATCGACGTGGCTGAAGAGGAGAAATATGACATGGAGGTGAAGGTGCAGAAGAGCAGCAAGGAGCTGG
AAGACATGAACCAGAAGCTATTTGACCTGAGGGGCAAGTTCAAGAGGCCCCCACTTCGGAGGGTGCGTAT
GTCTGCCGACGCCATGCTGAAGGCGCTGCTGGGCTCTAAGCACAAGGTGTGCATGGACCTGAGGGCCAAC
CTGAAGCAGGTCAAGAAGGAAGACACTGAGAAGGAACGGGACCTGCGTGACGTGGGTGACTGGAGGAAGA
ATATTGAGGAGAAGTCTGGCATGGAGGGCCGGAAGAAAATGTTCGAGTCTGAGTCCTAA

Translation (182 aa):
MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRRESEKENYLSEHCPPLHIPGSMSEVQELCKQLHA
KIDVAEEEKYDMEVKVQKSSKELEDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRAN
LKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFESES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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