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Report for CCDS40172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40172.1 Public Mus musculus 7 Spef1l 23 108 98 CCDS HistoryNCBI Gene:381933Re-query CCDS DB by CCDS ID:40172.1Re-query CCDS DB by GeneID:381933See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097970.8 ENSMUSP00000095584.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097970.8Link to Ensembl Protein Viewer:ENSMUSP00000095584.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097970Re-query CCDS DB by Protein ID:ENSMUSP00000095584
Original member Current member NCBI NM_001033465.3 NP_001028637.1 Accepted alive Link to Nucleotide Sequence:NM_001033465.3Link to Protein Sequence:NP_001028637.1Re-query CCDS DB by Nucleotide ID:NM_001033465Re-query CCDS DB by Protein ID:NP_001028637Link to BLAST:NP_001028637.1

Chromosomal Locations for CCDS 40172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139972467 139972607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139975862 139975958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139976041 139976128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139976475 139976673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139977072 139977222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139978034 139978145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139978547 139978682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGCTCAGTGCTTCCAAGCCGAGCTCAGCTTCGTTCCTGCCAACGCCTGGGGATATTCATAACCTCTGCG
CCTGGCTGGACCGGCTCCCACTCAGCCGCCCCAAGCGCCACTTGGCTCGGGACTTCAGTGATGGTGTGCT
GGTGGCCGAGATTGTGAAGCACTTCCGCCCTCGGCTGGTGGACTTGCACAGCTACGTCCCAGCCTGCAGT
ACAGACCAGAAGCTGAGCAACTGGAGCCTTCTCAACAGGAAAGTCTTTCGCAAGCTGCACTTGTGTATCT
CAGATAATGATATCCAAAGGGTGGTATCCAACAGGCCTGGAGTTATCGAGTCTATTCTATGTGCACTGAG
GGAGAAGATGGAGGCCAGGACTGTTCATGTAGGCTCAGCTGGTACAGCTGATCCAAGACACTCTGCTGTG
GATGCTGTCCGACCCTGGCGGGATCTTACCCCCAACCCACATACCTCTAAGATGCAAGATCCTGATGTGG
ATAACAGCAGCTTGTCAGAACCCCTCTGGGACTCCGGTGGAGAGCACCACTCTGTTCCCGAAAGCTGGGT
CCATGATGTTGAACTCCCAAACCTTCAAAAGAAGGCAGGCCTACAGAGCCCTCCAGCCCCCTCCAGCACG
AAGATCCTTCAGAATCAAAGGGATTTGGAGAAAATGGGCTGCTGTGCTTGCAGAGGGGACTCAATTGAAG
GGCTCTGGGATCACCTGGTCAGCATCCAGCAGCAGCTGGAGGATAAGGAGCAAGCACTAGCCATTCTGCA
GGAGACGGTCAAGATTTTGCAGTTGAAGGTGATGAGGTTGGAACACCTGGTACAGCTGAAGGACCAGCGG
ATCTGGGAGCTGATGAGAACTGGACCCGAGGAGCATCAGAGCTGGAGGAGGCCCCACCCAGAGTCACTCA
GACCTCGATCCTGA

Translation (307 aa):
MLSASKPSSASFLPTPGDIHNLCAWLDRLPLSRPKRHLARDFSDGVLVAEIVKHFRPRLVDLHSYVPACS
TDQKLSNWSLLNRKVFRKLHLCISDNDIQRVVSNRPGVIESILCALREKMEARTVHVGSAGTADPRHSAV
DAVRPWRDLTPNPHTSKMQDPDVDNSSLSEPLWDSGGEHHSVPESWVHDVELPNLQKKAGLQSPPAPSST
KILQNQRDLEKMGCCACRGDSIEGLWDHLVSIQQQLEDKEQALAILQETVKILQLKVMRLEHLVQLKDQR
IWELMRTGPEEHQSWRRPHPESLRPRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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