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Report for CCDS40083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40083.1 Public Mus musculus 7 Rpl27a 23 108 98 CCDS HistoryNCBI Gene:26451Re-query CCDS DB by CCDS ID:40083.1Re-query CCDS DB by GeneID:26451See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143107.1 ENSMUSP00000123410.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143107.1Link to Ensembl Protein Viewer:ENSMUSP00000123410.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143107Re-query CCDS DB by Protein ID:ENSMUSP00000123410
Original member NCBI NM_011975.3 NP_036105.2 Updated not alive Link to Nucleotide Sequence:NM_011975.3Link to Protein Sequence:NP_036105.2Re-query CCDS DB by Nucleotide ID:NM_011975Re-query CCDS DB by Protein ID:NP_036105
Current member NCBI NM_011975.4 NP_036105.2 Accepted alive Link to Nucleotide Sequence:NM_011975.4Link to Protein Sequence:NP_036105.2Re-query CCDS DB by Nucleotide ID:NM_011975Re-query CCDS DB by Protein ID:NP_036105Link to BLAST:NP_036105.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036105.2 148 P14115 148 100% 0 0

Chromosomal Locations for CCDS 40083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109519220 109519222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109519585 109519648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109519918 109519993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109520468 109520642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109521601 109521729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGCCATCCAGACTGAGGAAGACCCGGAAACTCCGGGGCCACGTGAGCCACGGCCACGGCCGCATCGGTA
AGCACCGCAAGCACCCAGGCGGCCGCGGGAATGCTGGAGGCATGCACCACCACAGGATCAACTTTGACAA
ATATCACCCAGGTTACTTTGGGAAAGTTGGTATGCGGCATTACCACTTGAAGAGGAACCAGAGCTTCTGC
CCAACAGTCAACCTGGATAAACTGTGGACATTGGTCAGCGAGCAGACACGGGTCAATGCGGCAAAAAACA
AGACTGGAGTTGCTCCCATCATTGATGTTGTTCGATCAGGCTACTACAAAGTTCTGGGCAAGGGAAAGCT
CCCTAAGCAACCTGTCATCGTGAAGGCCAAATTCTTCAGCAGAAGAGCTGAGGAGAAGATTAAGGGTGTT
GGAGGTGCCTGTGTTCTGGTGGCTTAA

Translation (148 aa):
MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFC
PTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGV
GGACVLVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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