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Report for CCDS40068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40068.1 Public Mus musculus 7 Trim30a 23 108 98 CCDS HistoryNCBI Gene:20128Re-query CCDS DB by CCDS ID:40068.1Re-query CCDS DB by GeneID:20128See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076922.5 ENSMUSP00000076189.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076922.5Link to Ensembl Protein Viewer:ENSMUSP00000076189.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076922Re-query CCDS DB by Protein ID:ENSMUSP00000076189
Original member Current member NCBI NM_001357467.1 NP_001344396.1 Accepted alive Link to Nucleotide Sequence:NM_001357467.1Link to Protein Sequence:NP_001344396.1Re-query CCDS DB by Nucleotide ID:NM_001357467Re-query CCDS DB by Protein ID:NP_001344396Link to BLAST:NP_001344396.1
Original member Current member NCBI NM_009099.2 NP_033125.2 Accepted alive Link to Nucleotide Sequence:NM_009099.2Link to Protein Sequence:NP_033125.2Re-query CCDS DB by Nucleotide ID:NM_009099Re-query CCDS DB by Protein ID:NP_033125Link to BLAST:NP_033125.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344396.1 496 P15533-1 496 100% 0 0
NP_033125.2 496 P15533-1 496 100% 0 0

Chromosomal Locations for CCDS 40068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104411077 104411669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104411919 104411945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104412215 104412315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104421435 104421457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104429121 104429351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104430131 104430226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104435582 104436001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGCCTCATCAGTCCTGGAGATGATAAAGGAGGAAGTAACCTGTCCTATCTGTTTGGAGCTCCTGAAGG
AACCTGTGAGTGCTGATTGTAACCACAGCTTCTGCAGAGCCTGCATCACACTGAATTATGAGTCCAACAG
AAACACAGACGGGAAGGGCAACTGCCCTGTATGCCGAGTTCCTTACCCATTTGGGAATCTGAGGCCTAAT
CTACATGTGGCCAACATAGTAGAGAGGCTCAAGGGATTCAAGTCCATTCCAGAGGAGGAGCAGAAGGTGA
ATATCTGTGCACAACATGGAGAGAAACTCCGGCTCTTCTGTAGGAAGGACATGATGGTCATCTGCTGGCT
TTGTGAGCGATCTCAGGAGCACCGTGGTCACCAAACAGCTCTCATTGAAGAGGTTGACCAAGAATACAAG
GAGAAGCTGCAGGGAGCTCTGTGGAAGCTGATGAAAAAGGCAAAAATATGTGATGAATGGCAGGATGACC
TTCAACTGCAGAGAGTTGACTGGGAGAACCAAATACAGATCAATGTAGAAAATGTTCAGAGACAGTTTAA
AGGACTAAGAGACCTCCTGGACTCCAAGGAGAATGAGGAGCTGCAGAAGCTGAAGAAAGAGAAGAAAGAG
GTTATGGAAAAGCTGGAAGAGTCTGAAAATGAGCTGGAGGATCAGACAGAGTTGGTGAGAGACCTCATCT
CAGATGTGGAACATCATTTGGAGCTCTCAACCTTAGAAATGCTGCAGGGTGCAAATTGTGTCCTGAGAAG
GAGTCAGTCCTTAAGCCTGCAACAGCCCCAAACTGTCCCCCAAAAGAGAAAAAGAACATTCCAAGCTCCA
GATCTGAAAGGCATGCTGCAAGTGTATCAAGGACTCATGGATATCCAGCAATACTGGGTTCATATGACTC
TACATGCAAGGAACAATGCAGTCATTGCCATTAACAAAGAAAAAAGACAAATACAGTATAGAAGTTACAA
TACGGTTCCAGTTTCTGAGATCTACCATTTGGGTGTCCTGGGATATCCAGCTCTTTCCTCAGGGAAGCAT
TACTGGGAAGTAGACATATCTAGAAGTGATGCCTGGCTCCTCGGATTAAATGACGGAAAGTGTGCTCAAC
CCCAACTTCACTCAAAGGAAGAAATGGGCATCAAAAAAAACCTTCATTCTCAGATCAAACAAAATGTATT
GTTTCAGCCTAAATGTGGCTACTGGGTTATAGGGATGAAGAATCCGTCTGTATACAAGGCCTTTGATGAG
TGTTCTATCACCCACAATTCCAGTATCCTGGTCATCTCTCTGCCTGATCGTCCCAGTCGTGTCGGAGTTT
TCCTGGATCGGAAAGCTGGCACTCTCTCATTTTATGATGTTTCTAACTGCGGTGCTCTCATCTATAGGTT
CTATGACCCTGCCTTCCCTGTTGAAGTCTATCCATATTTTAATCCTATGAAATGTTCAGAGCCAATGACT
ATATGCGGGCCACCCTCCTAA

Translation (496 aa):
MASSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLRPN
LHVANIVERLKGFKSIPEEEQKVNICAQHGEKLRLFCRKDMMVICWLCERSQEHRGHQTALIEEVDQEYK
EKLQGALWKLMKKAKICDEWQDDLQLQRVDWENQIQINVENVQRQFKGLRDLLDSKENEELQKLKKEKKE
VMEKLEESENELEDQTELVRDLISDVEHHLELSTLEMLQGANCVLRRSQSLSLQQPQTVPQKRKRTFQAP
DLKGMLQVYQGLMDIQQYWVHMTLHARNNAVIAINKEKRQIQYRSYNTVPVSEIYHLGVLGYPALSSGKH
YWEVDISRSDAWLLGLNDGKCAQPQLHSKEEMGIKKNLHSQIKQNVLFQPKCGYWVIGMKNPSVYKAFDE
CSITHNSSILVISLPDRPSRVGVFLDRKAGTLSFYDVSNCGALIYRFYDPAFPVEVYPYFNPMKCSEPMT
ICGPPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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