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Report for CCDS40035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40035.1 Public Mus musculus 7 Pgm2l1 23 108 98 CCDS HistoryNCBI Gene:70974Re-query CCDS DB by CCDS ID:40035.1Re-query CCDS DB by GeneID:70974See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40035.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054436.8 ENSMUSP00000054782.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054436.8Link to Ensembl Protein Viewer:ENSMUSP00000054782.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054436Re-query CCDS DB by Protein ID:ENSMUSP00000054782
Original member Current member EBI ENSMUST00000084935.10 ENSMUSP00000081998.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084935.10Link to Ensembl Protein Viewer:ENSMUSP00000081998.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084935Re-query CCDS DB by Protein ID:ENSMUSP00000081998
Original member Current member NCBI NM_027629.3 NP_081905.1 Accepted alive Link to Nucleotide Sequence:NM_027629.3Link to Protein Sequence:NP_081905.1Re-query CCDS DB by Nucleotide ID:NM_027629Re-query CCDS DB by Protein ID:NP_081905Link to BLAST:NP_081905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081905.1 621 Q8CAA7 621 100% 0 0

Chromosomal Locations for CCDS 40035.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100227924 100228034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100250292 100250459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100252185 100252291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100253233 100253317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100255534 100255617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100259884 100260077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100261600 100261789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100262066 100262163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100262911 100263088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100266665 100266758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100267486 100267615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100268117 100268306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100270328 100270461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100272327 100272429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGGCTGAGAACGCAGATGATGACCTGAACTCTAACCTGCTCCACGCCCCCTACCTCACTGGGGACCCCC
AGCTAGACACGGCCATCGGGCAGTGGCTGCGTTGGGACAAGAATCCCAAAACAAAAGAGCAGATTGAAAA
TCTCTTGCGGAATGGGATGAACAAGGAATTGCGTGATCGTCTTTGTTGCCGGATGACTTTTGGGACTGCA
GGACTTCGATCTGCCATGGGAGCAGGGTTTTGCTACATCAATGACCTTACAGTAATACAGTCAACACAGG
GGATGTACAAATACCTGGAGAGATGTTTTTCAGACTTCAAGCAAAGAGGCTTTGTTGTGGGCTATGACAC
TCGGGGTCAAGTGACTAGCAGCTGCAGCAGCCAGAGGCTTGCTAAACTCACAGCTGCAGTGCTGCTTGCT
AAAGATATTCCTGTTTACCTTTTCTCAAGATACGTTCCTACACCTTTCGTACCATATGCCGTTCAGGAGC
TCAAAGCAGTTGCAGGTGTGATGATTACTGCATCTCATAACCGCAAAGAGGACAACGGGTACAAGGTTTA
TTGGGAAACTGGTGCTCAAATCACATCTCCACATGATAAAGAAATTCTGAAATGTATAGAAGAGTGTGTG
GAACCCTGGAATGATTCTTGGAATGATAATTTAGTGGACACCAGCCCACTGAAGAAAGATCCTCTGCAGG
ACATTTGCAAGAAATACATGGAAGATCTGAAGAAGATCTGTTTTTACAGGGACTTAAATTCAAAGACCAC
CTTGAAATTTGTTCATACCTCCTTCCATGGAGTTGGACATGACTACGTGCAGTTGGCTTTTCAAGTATTT
GGTTTTAAGCCTCCAATTCCAGTCCCAGAACAGAAAGATCCAGATCCAGACTTTTCTACTGTTAAATGTC
CAAACCCTGAAGAAGGAGAATCTGTGCTGGAACTGTCCCTGAGACTGGCAGAGAAAGAAAATGCCCGGAT
AGTGCTAGCCACAGATCCTGATGCCGACCGGCTGGCTGTGGCAGAACTTCAGGAGAATGGCCGTTGGAAA
GTTTTCACAGGAAATGAGCTGGCAGCTTTGTTTGGGTGGTGGATGTTTGATTGCTGGAAGAAAAACAAAC
CAAACGCCGATGTGAAGAATGTTTACATGCTAGCCACCACTGTCTCTTCTAAAATTTTAAAGGCAATTGC
ACTTAAAGAAGGATTTCATTTTGAAGAAACATTACCAGGCTTTAAATGGATTGGAAGTAGGATAAAAGAC
CTCCTAGGAAATGGAAAAGAAGTCCTTTTTGCATTTGAAGAGTCTATTGGCTTTCTGTGTGGAACCTCCG
TGTTGGACAAAGATGGAGTGAGTGCAGCTGCTGTTGTTGCTGAGATGGCCTCTTTCCTGGATACCAGGAA
GGTAACACTGATGGAGCAACTGACAAAAGTGTATGAAATATACGGTTACCATATGTCCAAAACTTCATAT
TTCTTGTGTTATGATCCACCTACCATCAAAACCATATTTGAAAGGATTCGAAATTTTGAGTCTCCAAAGG
AATATCCAAAATTTTGTGGGGCTTTTGCTATTTTGCATGTACGGGACATAACCACTGGATATGATAGCAG
CCAGCCAAATAAGAAATCAGTACTGCCTGTGAGTAAAAACAGCCAAATGATTACATTTACCTTCCAAAAC
GGCTGTGTCGCTACTCTCCGAACAAGTGGGACAGAACCGAAGATAAAGTATTATGCAGAGATGTGTGCAT
CGCCTGGCCAGAGTGACACTACCTTCCTGGAAGAAGAATTAAAGAAACTCATTGACGCGCTGATAGAGAA
TTTTCTTGAGCCCAGTAAGAACGCACTGGTCTGGCGCTCTGTGTAG

Translation (621 aa):
MAENADDDLNSNLLHAPYLTGDPQLDTAIGQWLRWDKNPKTKEQIENLLRNGMNKELRDRLCCRMTFGTA
GLRSAMGAGFCYINDLTVIQSTQGMYKYLERCFSDFKQRGFVVGYDTRGQVTSSCSSQRLAKLTAAVLLA
KDIPVYLFSRYVPTPFVPYAVQELKAVAGVMITASHNRKEDNGYKVYWETGAQITSPHDKEILKCIEECV
EPWNDSWNDNLVDTSPLKKDPLQDICKKYMEDLKKICFYRDLNSKTTLKFVHTSFHGVGHDYVQLAFQVF
GFKPPIPVPEQKDPDPDFSTVKCPNPEEGESVLELSLRLAEKENARIVLATDPDADRLAVAELQENGRWK
VFTGNELAALFGWWMFDCWKKNKPNADVKNVYMLATTVSSKILKAIALKEGFHFEETLPGFKWIGSRIKD
LLGNGKEVLFAFEESIGFLCGTSVLDKDGVSAAAVVAEMASFLDTRKVTLMEQLTKVYEIYGYHMSKTSY
FLCYDPPTIKTIFERIRNFESPKEYPKFCGAFAILHVRDITTGYDSSQPNKKSVLPVSKNSQMITFTFQN
GCVATLRTSGTEPKIKYYAEMCASPGQSDTTFLEEELKKLIDALIENFLEPSKNALVWRSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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