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Report for CCDS4000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4000.1 Public Homo sapiens 5 CCDC125 24 110 108 CCDS HistoryNCBI Gene:202243Re-query CCDS DB by CCDS ID:4000.1Re-query CCDS DB by GeneID:202243See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 4000.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396496.7 ENSP00000379754.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396496.7Link to Ensembl Protein Viewer:ENSP00000379754.2Re-query CCDS DB by Nucleotide ID:ENST00000396496Re-query CCDS DB by Protein ID:ENSP00000379754
Original member Current member EBI ENST00000396499.5 ENSP00000379756.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396499.5Link to Ensembl Protein Viewer:ENSP00000379756.1Re-query CCDS DB by Nucleotide ID:ENST00000396499Re-query CCDS DB by Protein ID:ENSP00000379756
Original member Current member NCBI NM_176816.5 NP_789786.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_176816.5Link to Protein Sequence:NP_789786.2Re-query CCDS DB by Nucleotide ID:NM_176816Re-query CCDS DB by Protein ID:NP_789786Link to BLAST:NP_789786.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789786.2 511 Q86Z20-1 511 100% 0 0

Chromosomal Locations for CCDS 4000.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69282729 69283034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69285337 69285467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69292188 69292362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69294793 69294900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69300012 69300127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69303847 69303929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69306817 69306902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69307951 69308028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69311118 69311204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69313985 69314046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69320237 69320540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGAGCAAGGTGGCAAGATCATCAAGTGAGTCAGACGTGCAGCTCTGGGAAACAGAAGAGGATGACATGA
CAGAAGGTGATTTAGGGTATGGCCTCGGAAGGAAACCTGGTGGGATTTATGAAATAGAATTTTCACATAG
GTCTAGAAAAAGATCAGATGGAAAGAACTTTAGCCCTCCTCCATTTCCGAGAAAGGGAGAAGAAAGAAAT
GAAGCGAGTTTTCAGTATTCCAAGCATAAGAGCCAGCAAGATACATTCCCTCAAGTGTCCAGAATTTCCA
ATTACAGACGACAAAGTAGCACTGTAGATTCGAATTCAGAATTGTCAAATGAAGAATTAAGGCAATGTCT
TAATGAAACTTTAGAGGAGGTAGAAATGTTAAAAACTGAACTTGAGGCATCTCAAAGACAACTCAGAGGT
AAAGAGGAAGCATTGAAAATTCTTCAAAGCATGGCAATACTGGGCAAAGCCACAAGTCATACGCAGGCAG
TGCTTCAAAAAACTATGGAACAAAACAGATCCTTGGAGAAGGAAATAAATGCCTTGCAGTGGGAAATAGA
ATTTGATCATAATAGATTTAAAAATATAGAGGAATCTTGGATCCAAAAATATGACAGGCTAAACTGTGAA
AATGCAGTCCTCAAAGAGAATTTGAAAGTGAAAACAGAAGAAATTAAAATGCTGAAGTCTGACAATGCAG
TTTTGAATCAACGGTATTTGGAGGCCCTCGCCATGCTTGATATCAAACAGCAGAAGATGGCTCAGGAAAA
CATGTGCTGTGATAAAAGTGGCTTTGCAGAGGCTTCAGGTCTTGAGCTTGCGGTCCTCGGAGCCTGCCTT
TGTCATGGGCCCGGAGGGAACCCCTGTTCTTGTGCCAGAATGGCAGCATCCACTCGGAAACTGCTTCTTC
AGCTCAAACAAGAGTTGGAAATTTTGCAGAAGAGTAAAGAAGAAGCTTACGTGATGGCAGATGCTTTCAG
AATTGCATTTGAGCAACAATTAATGAGAAAAAATGACCAGGCACTACAATTGACACAAATGGATAAAATG
CATAAAAAAGCAACAAAATGGATGAATTGGAAGCACCTTAAAGAGGATGGATTTCCATCACCAAGGAGTA
AGAAGACCTTCGGGCAGAGACTGTTGGGTATGCTCCCTTCAGAAAACAGTTCTAAGAGGATGGAAGACCA
GGACAGTCCTCAAGAGGTCCTTAAGATGCTCATAGATTTGCTTAATGATAAAGAAGAAGCTTTGGCTCAT
CAAAGAAAAGTTAGCTACATGCTTGCTCGGGCATTGGAAGACAAAGACACTGCTTCAAACGAGAATAAAG
AAAAAAATCCTATAAAAGAGAATTTCCCTTTCAACAACCCCTGGCGTAAGACTTCAGAATTCTCTGTTTT
GGGTGATCCTATACATTCAAGTGTCTGCATTTTAAATTCTGTGGGCTGCATTTGTTCAATCCAGCACTCT
CAAATAGATCCAAACTATAGAACTCTTAAAAGATCCCATTCTTTGCCATCAAGTATCATATTTTAA

Translation (511 aa):
MSKVARSSSESDVQLWETEEDDMTEGDLGYGLGRKPGGIYEIEFSHRSRKRSDGKNFSPPPFPRKGEERN
EASFQYSKHKSQQDTFPQVSRISNYRRQSSTVDSNSELSNEELRQCLNETLEEVEMLKTELEASQRQLRG
KEEALKILQSMAILGKATSHTQAVLQKTMEQNRSLEKEINALQWEIEFDHNRFKNIEESWIQKYDRLNCE
NAVLKENLKVKTEEIKMLKSDNAVLNQRYLEALAMLDIKQQKMAQENMCCDKSGFAEASGLELAVLGACL
CHGPGGNPCSCARMAASTRKLLLQLKQELEILQKSKEEAYVMADAFRIAFEQQLMRKNDQALQLTQMDKM
HKKATKWMNWKHLKEDGFPSPRSKKTFGQRLLGMLPSENSSKRMEDQDSPQEVLKMLIDLLNDKEEALAH
QRKVSYMLARALEDKDTASNENKEKNPIKENFPFNNPWRKTSEFSVLGDPIHSSVCILNSVGCICSIQHS
QIDPNYRTLKRSHSLPSSIIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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