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Report for CCDS39849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39849.1 Public Mus musculus 7 Prx 23 108 98 CCDS HistoryNCBI Gene:19153Re-query CCDS DB by CCDS ID:39849.1Re-query CCDS DB by GeneID:19153See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108355.1 ENSMUSP00000103992.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108355.1Link to Ensembl Protein Viewer:ENSMUSP00000103992.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108355Re-query CCDS DB by Protein ID:ENSMUSP00000103992
Original member Current member NCBI NM_019412.2 NP_062285.1 Accepted alive Link to Nucleotide Sequence:NM_019412.2Link to Protein Sequence:NP_062285.1Re-query CCDS DB by Nucleotide ID:NM_019412Re-query CCDS DB by Protein ID:NP_062285Link to BLAST:NP_062285.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062285.1 148 O55103-2 148 100% 0 0

Chromosomal Locations for CCDS 39849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27504980 27505006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27507947 27508103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27515251 27515513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGGAGGCCAGGAGCCGCAGCGCTGAGGAGCTGAGACGGGCGGAGTTGGTGGAGATTATCGTGGAGACCG
AGGCACAGACCGGGGTCAGCGGCTTCAACGTAGCAGGCGGCGGCAAAGAAGGAATCTTTGTCCGTGAGCT
GCGAGAGGACTCACCGGCAGCTAAGAGCCTCAGCTTGCAAGAAGGGGACCAGCTGCTGAGTGCCCGTGTG
TTCTTTGAGAACTTCAAATATGAGGATGCACTTCGCCTGCTGCAATGCGCAGAGCCCTACAAGGTCTCCT
TCTGCTTGAAGCGCACTGTGCCCACCGGGGATCTGGCACTGAGGCCCGGGACGGTGTCTGGATACGAGAT
GAAGGGCCCACGGGCCAAAGTGGCCAAGCTGGTACGCGTGCTTAGCCCGGTCCCGGTCCAGGACAGCCCC
AGTGACCGGGTCGCTGCTGCGCCGTAA

Translation (148 aa):
MEARSRSAEELRRAELVEIIVETEAQTGVSGFNVAGGGKEGIFVRELREDSPAAKSLSLQEGDQLLSARV
FFENFKYEDALRLLQCAEPYKVSFCLKRTVPTGDLALRPGTVSGYEMKGPRAKVAKLVRVLSPVPVQDSP
SDRVAAAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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