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Report for CCDS39786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39786.1 Public Mus musculus 7 Strn4 23 108 98 CCDS HistoryNCBI Gene:97387Re-query CCDS DB by CCDS ID:39786.1Re-query CCDS DB by GeneID:97387See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 39786.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019220.15 ENSMUSP00000019220.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019220.15Link to Ensembl Protein Viewer:ENSMUSP00000019220.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000019220Re-query CCDS DB by Protein ID:ENSMUSP00000019220
Original member Current member NCBI NM_133789.3 NP_598550.2 Accepted alive Link to Nucleotide Sequence:NM_133789.3Link to Protein Sequence:NP_598550.2Re-query CCDS DB by Nucleotide ID:NM_133789Re-query CCDS DB by Protein ID:NP_598550Link to BLAST:NP_598550.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598550.2 760 P58404-1 760 100% 0 0

Chromosomal Locations for CCDS 39786.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16816353 16816634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16822496 16822599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16823006 16823079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16824139 16824217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16826464 16826661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16828675 16828816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16830326 16830485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16831025 16831138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16831465 16831580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16832926 16833101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16833178 16833225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16833875 16833996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16837562 16837732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16837849 16837989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16838270 16838368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16838563 16838649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16839741 16839910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGATGGAGGAGCGAGCGGCCGCCGCGGTCGCATCGGCCGCCTCCTCCTGCCGCCCTCTGGGCTCGGGCA
CGGCTCCCAACCCGACGGCGGCGGCCCCGGCCTCCAGCCCTGCTCCTGGGCCCGGCCCGGTAGGAAAAGG
AGGTGGCGGCGGAGGCAGCCCGGGCCCTACGGCGGGCCCGGAGCCCCTCAGCCTGCCGGGGATCCTGCAC
TTTATCCAACACGAGTGGGCACGCTTCGAAGCCGAGAAGGCCCGCTGGGAGGCCGAGCGCGCCGAGCTGC
AGGCTCAGGTGGCTTTCCTCCAGGGGGAGAGGAAAGGCCAAGAGAATCTAAAGACGGACCTGGTGCGGCG
GATCAAGATGCTGGAGTATGCACTAAAGCAGGAGAGGGCCAAATATCATAAACTGAAGTTTGGTACAGAC
CTGAATCAGGGGGAGAAGAAGACAGATCTGTCAGAACAAGTCTCCAATGGCCCTGTAGAGTCGGTCACAC
TGGAGAACAGCCCATTGGTGTGGAAGGAGGGTCGACAGCTTCTGCGACAGTACCTGGAAGAGGTGGGCTA
CACAGATACCATCTTGGACATGCGGTCCAAGCGTGTGCGTTCCCTTCTGGGCCGTTCACTGGAACTCAAT
GGGGCCGGTGAGCCCGTTGAGGGGGCCCCCAGGGCTTCACCAGGCCCTGGGGGACTTAGCGGTGGCGAGT
CTCTACTGGTAAAACAGATCGAGGAACAGATCAAGAGGAATGCAGCTGGCAAAGATGGCAAGGAGCGCCT
GGGTGGCTCGGTGCTGGAGCAGATACCCTTCCTGCAGAACTGCGAGGATGAAGACAGCGATGAGGATGAT
GAACTGGACAGTGTGCAGCATAAGAAGCAACGTGTGAGGCTCCCATCCAAGGCCCTAGTGCCTGAAATGG
AGGACGAGGATGAAGAGGATGACTCAGAAGATGCCATCAATGAGTTTGATTTCCTGGGCTCAGGAGAGGA
TGGAGAGGGGTCTCCAGATCCTCGACGTTGTACTTCAGAGGGGAACCCCCATGAGCTGGAAAGCCGTCGG
GTCAAACTCCAGGGAATTCTTGCTGACCTCCGGGATGTGGATGGGCTGCCCCCGAAAGTGACTGTCCCAC
CTCCTGGCACACCCCAGCCCCGGCCTCATGAAGGTTCCTTTGGCTTCTCCTCAGACGTCTTCATCATGGA
CACTATCGGGGGCGGGGAGGTGAGCCTGGGGGACTTGGCAGATCTCACCGTCACCAATGACAACGACCTC
AGCTGTGATCTGTCTGACAGCAAAGACGCTTTCAAGAAGACATGGAACCCCAAGTTTACCCTCCGCTCAC
ACTACGATGGCATCCGCTCCCTGGCCTTCCACCACAGCCAGTCAGCACTGCTTACTGCCTCTGAGGATGG
CACACTCAAACTGTGGAACCTGCAGAAGGCAGTTACGGCCAAGAAAAATGCTGCACTGGATGTGGAGCCG
ATTCATGCTTTCCGAGCTCACAGGGGCCCGGTGCTGGCAGTCACCATGGGCAGCAACAGCGAGTACTGTT
ACAGTGGTGGGGCTGATGCCAGGATCCACAGCTGGAAGATTCCTGACCTCAACATGGACCCATATGATGG
CTATGACCCAAGTGTGCTGAGCCATGTCCTGGAAGGCCATGGGGATGCTGTGTGGGGTCTGGCCTTCAGT
CCCACCTCCCAGCGCCTAGCATCCTGCTCTGCCGATGGCACCGTCCGCATCTGGGATCCCAGCAGCAGTG
GTCCAAGCTGCCTCTGTACCTTCCCCATGGATGGAGAACATGGAATTCCCACCTCAGTGGCCTTCACCAG
CACTGAACCTGCCCATGTCGTGGCCTCCTTTCGTTCTGGTGATACCGTTCTTTATGACCTGGAAGCTGGC
AGCGCCCTTCTCACATTGGAGTCTCGAGGGAGCAGTGGCCCAGCACAGATCAACCAGGTGGTGAGTCACC
CAAGCCAGCCTCTCACCATCACTGCACACGACGACAGGGGCATCCGGTTCCTGGACAATCGAACAGGTAA
ATCTGTGCATTCCATGGTGGCCCACCTGGATGCAGTCACCTGCCTAGCTGTGGACCCAAATGGCGTGTTC
TTGATGTCAGGAAGCCACGACTGTTCTCTGCGTTTATGGAGCCTAGACAACAAGACATGTGTGCAGGAGA
TCACGGCCCACCGCAAGAAGCATGAGGAGGCCATCCATGCAGTGGCCTGCCATCCCAGCAAGGCACTTAT
TGCCAGTGCTGGTGCTGATGCCCTAGCCAAGGTCTTCGTATGA

Translation (760 aa):
MMEERAAAAVASAASSCRPLGSGTAPNPTAAAPASSPAPGPGPVGKGGGGGGSPGPTAGPEPLSLPGILH
FIQHEWARFEAEKARWEAERAELQAQVAFLQGERKGQENLKTDLVRRIKMLEYALKQERAKYHKLKFGTD
LNQGEKKTDLSEQVSNGPVESVTLENSPLVWKEGRQLLRQYLEEVGYTDTILDMRSKRVRSLLGRSLELN
GAGEPVEGAPRASPGPGGLSGGESLLVKQIEEQIKRNAAGKDGKERLGGSVLEQIPFLQNCEDEDSDEDD
ELDSVQHKKQRVRLPSKALVPEMEDEDEEDDSEDAINEFDFLGSGEDGEGSPDPRRCTSEGNPHELESRR
VKLQGILADLRDVDGLPPKVTVPPPGTPQPRPHEGSFGFSSDVFIMDTIGGGEVSLGDLADLTVTNDNDL
SCDLSDSKDAFKKTWNPKFTLRSHYDGIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEP
IHAFRAHRGPVLAVTMGSNSEYCYSGGADARIHSWKIPDLNMDPYDGYDPSVLSHVLEGHGDAVWGLAFS
PTSQRLASCSADGTVRIWDPSSSGPSCLCTFPMDGEHGIPTSVAFTSTEPAHVVASFRSGDTVLYDLEAG
SALLTLESRGSSGPAQINQVVSHPSQPLTITAHDDRGIRFLDNRTGKSVHSMVAHLDAVTCLAVDPNGVF
LMSGSHDCSLRLWSLDNKTCVQEITAHRKKHEEAIHAVACHPSKALIASAGADALAKVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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