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Report for CCDS3976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3976.1 Public Homo sapiens 5 RAB3C 24 110 108 CCDS HistoryNCBI Gene:115827Re-query CCDS DB by CCDS ID:3976.1Re-query CCDS DB by GeneID:115827See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282878.6 ENSP00000282878.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282878.6Link to Ensembl Protein Viewer:ENSP00000282878.4Re-query CCDS DB by Nucleotide ID:ENST00000282878Re-query CCDS DB by Protein ID:ENSP00000282878
Original member Current member NCBI NM_138453.4 NP_612462.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138453.4Link to Protein Sequence:NP_612462.1Re-query CCDS DB by Nucleotide ID:NM_138453Re-query CCDS DB by Protein ID:NP_612462Link to BLAST:NP_612462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612462.1 227 Q96E17 227 100% 0 0

Chromosomal Locations for CCDS 3976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 58583209 58583232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 58617643 58617870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 58726002 58726120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 58825038 58825162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 58851164 58851351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGAGACACGAAGCGCCCATGCAGATGGCCTCTGCCCAAGATGCCAGGTACGGCCAGAAAGACTCCTCTG
ATCAGAACTTTGACTACATGTTCAAATTACTCATCATCGGCAATAGCAGTGTGGGGAAAACATCTTTTCT
ATTCCGTTATGCAGATGACTCCTTTACATCTGCATTCGTCAGCACAGTTGGGATCGATTTCAAAGTAAAA
ACTGTATTCAAAAATGAAAAGAGAATCAAGCTTCAGATTTGGGACACAGCAGGCCAGGAAAGATACAGGA
CTATCACCACAGCCTATTATCGTGGAGCCATGGGCTTTATTTTAATGTATGACATTACAAATGAAGAATC
CTTCAATGCAGTACAAGATTGGTCAACTCAAATCAAAACATACTCTTGGGACAATGCCCAAGTTATTCTG
GTTGGGAACAAGTGTGACATGGAAGACGAGCGGGTCATCTCAACTGAGCGAGGTCAACATTTAGGAGAAC
AGCTTGGGTTTGAGTTTTTTGAAACAAGTGCCAAGGACAACATTAATGTCAAGCAGACATTTGAGCGCCT
TGTGGATATCATCTGCGACAAAATGTCAGAGAGTTTGGAGACTGATCCTGCCATCACTGCTGCAAAGCAG
AACACGAGACTCAAGGAAACTCCTCCTCCACCGCAGCCCAACTGTGCCTGCTAG

Translation (227 aa):
MRHEAPMQMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK
TVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL
VGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQ
NTRLKETPPPPQPNCAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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