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Report for CCDS39736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39736.1 Public Mus musculus 7 Tnni3 23 108 98 CCDS HistoryNCBI Gene:21954Re-query CCDS DB by CCDS ID:39736.1Re-query CCDS DB by GeneID:21954See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098859.9 ENSMUSP00000096458.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098859.9Link to Ensembl Protein Viewer:ENSMUSP00000096458.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098859Re-query CCDS DB by Protein ID:ENSMUSP00000096458
Original member Current member NCBI NM_009406.4 NP_033432.1 Accepted alive Link to Nucleotide Sequence:NM_009406.4Link to Protein Sequence:NP_033432.1Re-query CCDS DB by Nucleotide ID:NM_009406Re-query CCDS DB by Protein ID:NP_033432Link to BLAST:NP_033432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033432.1 211 P48787 211 100% 0 0

Chromosomal Locations for CCDS 39736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4518368 4518451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4519398 4519574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4520438 4520527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4520963 4521094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4521345 4521386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4521816 4521902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4522070 4522082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4522305 4522315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCTGATGAGAGCAGCGATGCGGCTGGGGAACCGCAGCCTGCGCCTGCTCCTGTCCGACGCCGCTCCT
CTGCCAACTACCGAGCCTATGCCACCGAGCCACACGCCAAGAAAAAGTCTAAGATCTCCGCCTCCAGAAA
ACTTCAGTTGAAGACTCTGATGCTGCAGATTGCGAAGCAGGAGATGGAACGAGAGGCAGAAGAGCGACGT
GGAGAGAAGGGGCGCGTTCTGAGGACTCGTTGCCAGCCTTTGGAGTTGGATGGGCTGGGCTTTGAAGAGC
TTCAGGACTTATGCCGACAGCTTCACGCTCGGGTGGACAAAGTGGATGAAGAGAGATATGACGTGGAAGC
AAAAGTCACCAAGAACATCACTGAGATTGCAGATCTGACCCAGAAGATCTATGACCTCCGTGGCAAGTTT
AAGCGGCCCACCCTCCGAAGAGTGAGGATCTCTGCAGATGCCATGATGCAGGCGCTGCTGGGGACCCGGG
CCAAGGAATCCTTGGACCTGAGGGCCCACCTCAAGCAGGTGAAGAAGGAGGACATTGAGAAGGAAAACCG
GGAGGTGGGAGACTGGCGCAAGAATATCGATGCACTGAGTGGCATGGAAGGCCGCAAGAAAAAGTTTGAG
GGCTGA

Translation (211 aa):
MADESSDAAGEPQPAPAPVRRRSSANYRAYATEPHAKKKSKISASRKLQLKTLMLQIAKQEMEREAEERR
GEKGRVLRTRCQPLELDGLGFEELQDLCRQLHARVDKVDEERYDVEAKVTKNITEIADLTQKIYDLRGKF
KRPTLRRVRISADAMMQALLGTRAKESLDLRAHLKQVKKEDIEKENREVGDWRKNIDALSGMEGRKKKFE
G


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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