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Report for CCDS39723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39723.1 Public Mus musculus 6 Bicd1 23 108 98 CCDS HistoryNCBI Gene:12121Re-query CCDS DB by CCDS ID:39723.1Re-query CCDS DB by GeneID:12121See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086829.10 ENSMUSP00000084039.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086829.10Link to Ensembl Protein Viewer:ENSMUSP00000084039.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086829Re-query CCDS DB by Protein ID:ENSMUSP00000084039
Original member Current member NCBI NM_009753.4 NP_033883.2 Accepted alive Link to Nucleotide Sequence:NM_009753.4Link to Protein Sequence:NP_033883.2Re-query CCDS DB by Nucleotide ID:NM_009753Re-query CCDS DB by Protein ID:NP_033883Link to BLAST:NP_033883.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033883.2 835 Q8BR07-1 835 100% 0 0

Chromosomal Locations for CCDS 39723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149409429 149409641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149483984 149484196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149494560 149494712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149511692 149512117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149512796 149513890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149516933 149517084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149518906 149519113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149550350 149550397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2508 nt):
ATGGCCGCAGAGGAGGCGCTGAAGACGGTAGACCAATATAAGACTGAAATAGAGAGACTGACCAAGGAGC
TCACAGAAACGACCCATGAGAAGATCCAGGCTGCAGAGTATGGGCTGGTGGTGCTGGAGGAGAAACTGAC
TCTCAAGCAACAGTATGACGAGCTGGAGGCCGAGTATGACGGCCTCAAACAAGAGCTGGAGCAGCTCAGA
GAGGCATTTGGGCAGTCCTTCTCTATCCACCGTAAAGTAGCTGAGGATGGAGAGACTCGGGAGGAAACAC
TTCTTCAGGAGTCTGCATCCAAAGAAGCTTACTATCTAAACAAGATCTTGGAGATGCAGAATGAGCTGAA
GCAGAGCCGGGCTGTGGTTACAAATGTCCAGGCAGAAAATGAGAGGCTCTCGGCCGTTGTACAGGAACTG
AAAGAGAACAACGAGATGGTGGAGCTACAGAGAATACGAATGAAAGATGAAATCCGAGAATATAAATTCC
GGGAGGCCCGACTCCTTCAGGACTACACAGAATTGGAAGAAGAAAATATCACATTGCAGAAACTAGTGTC
CACATTGAAGCAGAACCAGGTTGAATACGAAGGCTTAAAGCATGAAATTAAGCGATTTGAAGAAGAAACA
GTATTACTGAATAGCCAACTAGAAGATGCCATTCGACTGAAAGAGATTGCAGAGCATCAGTTGGAAGAAG
CCCTTGAGACACTGAAGAATGAAAGAGAGCAAAAGAACAACCTGAGGAAGGAGCTGTCCCAGTACATCAA
CCTCAGTGATAGCCACATCAGCATCTCAGTAGATGGGCTCAAGTTTGCTGAGGATGGAAGTGAGCCAAAT
AACGATGACAAGATGAATGGACATATCCATGGGCCTCTTGGGAAACTGAATGGAGACTATCGTACTCCCA
CTACCAGGAAAGGAGAGTCCCTACACCCTGTGTCTGACTTATTCAGTGAGTTGAACATTTCAGAAATACA
GAAATTGAAGCAGCAGCTTATTCAGGTAGAGAGGGAAAAAGCTATTCTTCTGGCCAACCTCCAGGAGTCA
CAAACCCAGCTAGAACATACCAAGGGGGCACTGACAGAGCAGCATGAGCGAGTGCACCGGCTCACAGAGC
ATGTCAATGCTATGAGGGGCTTGCAAAACAGCAAAGAGATCAAGGCTGAGCTAGATTGTGAGAAGGGCCG
GAACTCAGCGGAGGAAGCTCATGACTATGAGGTGGACATCAATGGCTTAGAGATCCTTGAGTGCAAATAT
AGAGTGGCCGTCACAGAAGTCATTGATTTGAAAGCAGAAATTAAGGCCTTAAAGGAAAAATATAATAAAT
CTGTAGAAAATTATACAGAAGAAAAGACCAAATATGAGAGTAAGATCCAAATGTATGATGAACAAGTGAC
AAACCTTGAGAAGACATCTAAGGAGAGTGGTGAGAAGATGGCCCACATGGAGAAGGAGTTGCAAAAGATG
ACTGGCATAGCCAACGAAAATCACAACACCCTCAATACAGCCCAGGATGAGTTGGTGACATTTAGTGAGG
AACTAGCCCAGCTTTACCACCATGTGTGTCTATGTAATAATGAAACTCCCAATAGAGTCATGTTGGACTA
CTATAGACAAAGCAGAGTTACTCGAAGTGGCAGCCTCAAGGGGCCTGATGATCCCAGAGGGCTTTTGTCG
CCAAGATTATCCAGGAGGGGTGTGTCATCCCCTGTAGAATCAAGGACATCATCTGAACCAGTTTCAAAGG
AAAATACAGAGACTAGTAAAGAGCCAAGTCCAACTAAGACTCCCACAATCTCTCCTGTTATTACTGCCCC
ACCATCATCTCCAGTTTTGGATACCAGTGATATTCGCAAAGAGCCAATGAATATCTACAACCTCAATGCC
ATAATCCGGGACCAAATCAAGCATCTGCAGAAGGCAGTGGACAGGTCCTTACAGCTGTCTCGTCAAAGAG
CAGCAGCCCGAGAGTTGGCCCCCATGATTGATAAGGACAAGGAAGCCTTAATGGAAGAGATTCTCAAACT
GAAGTCCTTGCTGAGCACCAAACGGGAGCAGATTGCGACACTGAGGGCAGTGTTGAAAGCCAATAAGCAG
ACAGCTGAAGTGGCTTTAGCTAACCTGAAGAACAAATATGAAAATGAAAAGGCAATGGTTACTGAAACAA
TGACAAAACTGAGGAATGAACTAAAGGCTTTGAAGGAAGATGCTGCAACCTTCTCATCCCTGAGAGCAAT
GTTTGCAACAAGATGCGATGAATATGTCACACAGTTGGATGAGATGCAGAGACAGTTAGCAGCTGCAGAA
GATGAGAAGAAGACTCTAAACACTTTATTGCGAATGGCTATCCAGCAAAAACTCGCCCTGACACAGAGGC
TGGAGGACTTAGAGTTTGACCATGAGCAGTCCCGACGCAGCAAAGGCAAACTTGGAAAGAGCAAGATCGG
CAGCCCTAAAATTGTCAGCAGCCTGCTGCCTCCGTACCGCCACAGTGCTCACAACTAG

Translation (835 aa):
MAAEEALKTVDQYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDELEAEYDGLKQELEQLR
EAFGQSFSIHRKVAEDGETREETLLQESASKEAYYLNKILEMQNELKQSRAVVTNVQAENERLSAVVQEL
KENNEMVELQRIRMKDEIREYKFREARLLQDYTELEEENITLQKLVSTLKQNQVEYEGLKHEIKRFEEET
VLLNSQLEDAIRLKEIAEHQLEEALETLKNEREQKNNLRKELSQYINLSDSHISISVDGLKFAEDGSEPN
NDDKMNGHIHGPLGKLNGDYRTPTTRKGESLHPVSDLFSELNISEIQKLKQQLIQVEREKAILLANLQES
QTQLEHTKGALTEQHERVHRLTEHVNAMRGLQNSKEIKAELDCEKGRNSAEEAHDYEVDINGLEILECKY
RVAVTEVIDLKAEIKALKEKYNKSVENYTEEKTKYESKIQMYDEQVTNLEKTSKESGEKMAHMEKELQKM
TGIANENHNTLNTAQDELVTFSEELAQLYHHVCLCNNETPNRVMLDYYRQSRVTRSGSLKGPDDPRGLLS
PRLSRRGVSSPVESRTSSEPVSKENTETSKEPSPTKTPTISPVITAPPSSPVLDTSDIRKEPMNIYNLNA
IIRDQIKHLQKAVDRSLQLSRQRAAARELAPMIDKDKEALMEEILKLKSLLSTKREQIATLRAVLKANKQ
TAEVALANLKNKYENEKAMVTETMTKLRNELKALKEDAATFSSLRAMFATRCDEYVTQLDEMQRQLAAAE
DEKKTLNTLLRMAIQQKLALTQRLEDLEFDHEQSRRSKGKLGKSKIGSPKIVSSLLPPYRHSAHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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