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Report for CCDS39711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39711.1 Public Mus musculus 6 Fgfr1op2 23 108 98 CCDS HistoryNCBI Gene:67529Re-query CCDS DB by CCDS ID:39711.1Re-query CCDS DB by GeneID:67529See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111663.8 ENSMUSP00000107292.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111663.8Link to Ensembl Protein Viewer:ENSMUSP00000107292.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111663Re-query CCDS DB by Protein ID:ENSMUSP00000107292
Original member Current member NCBI NM_026218.2 NP_080494.1 Accepted alive Link to Nucleotide Sequence:NM_026218.2Link to Protein Sequence:NP_080494.1Re-query CCDS DB by Nucleotide ID:NM_026218Re-query CCDS DB by Protein ID:NP_080494Link to BLAST:NP_080494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080494.1 253 Q9CRA9-1 253 100% 0 0

Chromosomal Locations for CCDS 39711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 146585684 146585818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146588740 146588857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146589894 146590036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146592634 146592747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146595176 146595289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146597295 146597432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAGCTGCACCATTGAGAAGGCACTTGCTGACGCTAAAGCCCTTGTTGAAAGGTTGAGAGATCATGATG
ATGCAGCAGAGTCTCTCATCGAGCAGACCACTGCCCTCAGCAAGCGAGTGGAAGCGATGAAGCAGTATCA
GGAGGAAATCCAAGAACTTAATGAAGTAGCAAGACATCGGCCACGATCCACACTAGTTATGGGAATCCAG
CAAGAAAACAGACAAATCAGAGAATTACAACAAGAAAACAAAGAACTGCGGACATCCCTGGAAGAGCACC
AGTCTGCCCTGGAACTGATAATGAGCAAGTACCGAGAGCAGATGTTCAGACTGCTCATGGCCAGCAAGAA
AGATGACCCAGGTATAATAATGAAGTTAAAAGAGCAACACTCAAAGATTGACATGGTACATCGTAACAGC
TGCGAAGGATTCTTCCTGGATGCATCTCGGCACATCCTTGAAGCACCTCAGCACGGACTGGAGAGGAGGC
ACTTGGAGGCAAATCAGAATGAGTTGCAAGCACATGTTGACCAAATCACCGAGATGGCAGCAGTAATGAG
AAAAGCTATTGAAATTGACGAGCAGCAGGGTTGCAAGGAACAGGAGCGGATATTTCAACTTGAACAAGAA
AATAAAGGCTTGAGAGAGATCCTTCAGATAACTCGAGAATCCTTTTTGAACCTTCGGAAGGATGATGCGT
CAGAGAGTACGTCTCTATCTGCCTTAGTGACTAACAGTGACCTGAGTCTGAGGAAGAGCTGA

Translation (253 aa):
MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQ
QENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRNS
CEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQE
NKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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