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Report for CCDS39703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39703.1 Public Mus musculus 6 Bcat1 23 108 98 CCDS HistoryNCBI Gene:12035Re-query CCDS DB by CCDS ID:39703.1Re-query CCDS DB by GeneID:12035See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111742.7 ENSMUSP00000107371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111742.7Link to Ensembl Protein Viewer:ENSMUSP00000107371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111742Re-query CCDS DB by Protein ID:ENSMUSP00000107371
Original member Current member NCBI NM_007532.5 NP_031558.3 Accepted alive Link to Nucleotide Sequence:NM_007532.5Link to Protein Sequence:NP_031558.3Re-query CCDS DB by Nucleotide ID:NM_007532Re-query CCDS DB by Protein ID:NP_031558Link to BLAST:NP_031558.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031558.3 386 P24288 386 100% 0 0

Chromosomal Locations for CCDS 39703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 145000263 145000304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145004351 145004425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145007616 145007756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145010050 145010135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145015449 145015591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145019192 145019355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145032783 145032902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145034541 145034651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145039435 145039635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145047292 145047363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145075889 145075894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGAAGGACTGCAGTAATGGATGCTCCGCGCCGTTTGCTGGAGAAAGAGGATCAGAAGAAGTGGCGGAGA
CTTTTAGGGCCAAAGATCTCATCATCACACCAGCCACTGTCTTAAAAGAGAAGCCGGACCCGGATTCGCT
GGTCTTTGGAGCTACGTTTACTGACCACATGCTGACGGTGGAGTGGTCCTCTGCGTCTGGATGGGAGAAA
CCTCACATTAAGCCTTTTGGAAACTTGCCCATACATCCCGCTGCCTCTGTTTTGCACTACGCTGTGGAAC
TGTTTGAAGGCTTGAAAGCCTTTCGGGGAGTTGATAACAAGATCCGATTGTTCCGGCCGGACCTCAACAT
GGATAGAATGTGCCGATCTGCTGTGAGGACCACGCTGCCGATGTTTGACAAGGAGGAGCTCCTAAAGTGT
ATTCTTCAGCTTCTACAGATCGACCAAGAATGGGTTCCCTACTCCACCTCTGCCAGCCTCTACATCCGCC
CCACATTTATCGGAACTGAGCCATCTCTTGGCGTCAAGAAGCCTTCCAAAGCCCTACTCTTTGTGATCCT
GAGCCCCGTGGGACCTTATTTTTCTAGTGGATCTTTTACTCCGGTGTCCCTGTGGGCCAATCCAAAGTAC
ATCAGAGCCTGGAAAGGTGGGACTGGAGACTGCAAGATGGGCGGCAATTATGGAGCCTCCCTTCTGGCAC
AGTGCGAGGCCGTGGAGAATGGCTGTCAGCAGGTCCTGTGGCTGTACGGCAAGGACAACCAGATAACTGA
AGTAGGCACAATGAATCTTTTCCTCTACTGGATAAACGAAGACGGAGAAGAGGAGCTGGCAACGCCCCCA
CTAGATGGCATCATTCTCCCAGGAGTGACCAGGCAGAGCATCCTGGAGCTGGCACAACAGTGGGGTGAGT
TTAAGGTATGTGAGAGACACCTCACCATGGATGACCTGGCCACCGCCCTTGAGGGGAACAGAGTGAAGGA
GATGTTCGGCTCAGGGACAGCCTGCGTTGTCTGCCCAGTCTCTGATATTCTGTACAAGGGCCAGATGCTG
CATATTCCAACGATGGAGAATGGCCCCAAGCTTGCAAGTCGAATCCTGGGAAAGCTGACTGATATCCAGT
ATGGAAGGGTGGAGAGTGACTGGACAATCGAGCTACCCTGA

Translation (386 aa):
MKDCSNGCSAPFAGERGSEEVAETFRAKDLIITPATVLKEKPDPDSLVFGATFTDHMLTVEWSSASGWEK
PHIKPFGNLPIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMDRMCRSAVRTTLPMFDKEELLKC
ILQLLQIDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPSKALLFVILSPVGPYFSSGSFTPVSLWANPKY
IRAWKGGTGDCKMGGNYGASLLAQCEAVENGCQQVLWLYGKDNQITEVGTMNLFLYWINEDGEEELATPP
LDGIILPGVTRQSILELAQQWGEFKVCERHLTMDDLATALEGNRVKEMFGSGTACVVCPVSDILYKGQML
HIPTMENGPKLASRILGKLTDIQYGRVESDWTIELP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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