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Report for CCDS39660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39660.1 Public Mus musculus 6 Klrk1 23 108 98 CCDS HistoryNCBI Gene:27007Re-query CCDS DB by CCDS ID:39660.1Re-query CCDS DB by GeneID:27007See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032252.7 ENSMUSP00000032252.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032252.7Link to Ensembl Protein Viewer:ENSMUSP00000032252.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032252Re-query CCDS DB by Protein ID:ENSMUSP00000032252
Original member Current member NCBI NM_033078.4 NP_149069.1 Accepted alive Link to Nucleotide Sequence:NM_033078.4Link to Protein Sequence:NP_149069.1Re-query CCDS DB by Nucleotide ID:NM_033078Re-query CCDS DB by Protein ID:NP_149069Link to BLAST:NP_149069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149069.1 232 O54709-1 232 100% 0 0

Chromosomal Locations for CCDS 39660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129612786 129612903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129614603 129614706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129615309 129615460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129616297 129616332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129616669 129616773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129617483 129617521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129621135 129621242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129622537 129622573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGCATTGATTCGTGATCGAAAGTCTCATCACTCAGAGATGAGCAAATGCCATAATTACGACCTCAAGC
CAGCAAAGTGGGATACTTCTCAAGAACAACAGAAACAAAGATTAGCACTAACTACCAGTCAACCTGGAGA
AAATGGTATCATAAGAGGAAGATACCCTATAGAAAAACTCAAAATATCTCCAATGTTCGTTGTTCGAGTC
CTTGCTATAGCCTTGGCAATTCGATTCACCCTTAACACATTGATGTGGCTTGCCATTTTCAAAGAGACGT
TTCAGCCAGTATTGTGCAACAAGGAAGTCCCAGTTTCCTCAAGAGAGGGCTACTGTGGCCCATGCCCTAA
CAACTGGATATGTCACAGAAACAACTGTTACCAATTTTTTAATGAAGAGAAAACCTGGAACCAGAGCCAA
GCTTCCTGTTTGTCTCAAAATTCCAGCCTTCTGAAGATATACAGTAAAGAAGAACAGGATTTCTTAAAGC
TGGTTAAGTCCTATCACTGGATGGGACTGGTCCAGATCCCAGCAAATGGCTCCTGGCAGTGGGAAGATGG
CTCCTCTCTCTCATACAATCAGTTAACTCTGGTGGAAATACCAAAAGGATCCTGTGCTGTCTATGGCTCA
AGCTTTAAGGCTTACACAGAAGACTGTGCAAATCTAAACACGTACATCTGCATGAAAAGGGCGGTGTAA

Translation (232 aa):
MALIRDRKSHHSEMSKCHNYDLKPAKWDTSQEQQKQRLALTTSQPGENGIIRGRYPIEKLKISPMFVVRV
LAIALAIRFTLNTLMWLAIFKETFQPVLCNKEVPVSSREGYCGPCPNNWICHRNNCYQFFNEEKTWNQSQ
ASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMGLVQIPANGSWQWEDGSSLSYNQLTLVEIPKGSCAVYGS
SFKAYTEDCANLNTYICMKRAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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