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Report for CCDS39611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39611.1 Public Mus musculus 6 Erc1 23 108 98 CCDS HistoryNCBI Gene:111173Re-query CCDS DB by CCDS ID:39611.1Re-query CCDS DB by GeneID:111173See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032279.11 ENSMUSP00000032279.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032279.11Link to Ensembl Protein Viewer:ENSMUSP00000032279.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032279Re-query CCDS DB by Protein ID:ENSMUSP00000032279
Original member Current member EBI ENSMUST00000183703.7 ENSMUSP00000139031.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183703.7Link to Ensembl Protein Viewer:ENSMUSP00000139031.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183703Re-query CCDS DB by Protein ID:ENSMUSP00000139031
Original member Current member NCBI NM_053204.2 NP_444434.2 Accepted alive Link to Nucleotide Sequence:NM_053204.2Link to Protein Sequence:NP_444434.2Re-query CCDS DB by Nucleotide ID:NM_053204Re-query CCDS DB by Protein ID:NP_444434Link to BLAST:NP_444434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444434.2 1120 Q99MI1-1 1120 99.9107% 0 1

Chromosomal Locations for CCDS 39611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 119575625 119575762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119594785 119594973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119620311 119620409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119630603 119630747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119694571 119694731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119713680 119713811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119722173 119722308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119734081 119734092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119743288 119743481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119749838 119749978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119751200 119751340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119753259 119753396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119761144 119761311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119773734 119773901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119777988 119778071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119779477 119779632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119783389 119783463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119796907 119797323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119824386 119825054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3363 nt):
ATGTATGGAAGTGCTCGATCAGTAGGGAAGGTGGAACCAAGCAGCCAGAGTCCTGGGCGATCACCTCGGC
TTCCTCGGTCCCCTCGCTTAGGTCATCGGCGAACAAATAGTACAGGAGGGAGTTCTGGAAACAGTGTTGG
AGGTGGCAGTGGGAAAACCCTTTCAATGGAGAATATACAGTCCTTAAATGCTGCCTATGCTACATCTGGC
CCTATGTACCTAAGTGACCATGAAAACGTGGGTGCAGAAACACCTAAAAGCACCATGACACTTGGCCGTT
CTGGGGGACGCTTGCCTTACGGTGTTAGGATGACTGCTATGGGCAGTAGCCCCAACATAGCAAGCAGTGG
GGTTGCTAGTGATACCATAGCATTTGGAGAACATCACCTCCCTCCTGTTAGTATGGCATCTACTGTACCT
CACTCTCTTCGTCAGGCAAGAGATAACACCATCATGGATCTGCAGACACAGCTGAAGGAAGTATTAAGAG
AAAACGATCTTTTGAGGAAAGATGTGGAAGTAAAGGAGAGCAAATTAAGTTCATCAATGAATAGTATCAA
GACCTTCTGGAGCCCAGAGTTAAAGAAAGAGCGGGCCTTGAGAAAAGATGAAGCTTCCAAAATCACCATT
TGGAAGGAGCAGTACCGAGTTGTACAGGAGGAAAACCAGCACATGCAGATGACAATCCAGGCTCTCCAGG
ATGAGCTGCGGATCCAGAGGGACTTGAATCAGCTGTTTCAGCAAGATAGCAGCAGTAGGACTGGGGAGCC
TTGCGTGGCAGAGCTCACAGAGGAGAACTTCCAGAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAAGAG
CTGTTTCTTCTGCGGAAGACCCTGGAGGAAATGGAGCTGAGGATTGAGACTCAGAAGCAGACCCTAAATG
CTCGGGATGAGTCCATCAAGAAGCTTCTGGAGATGCTCCAGAGCAAAGGACTTTCTGCCAAAGCTACAGA
GGAAGACCATGAGAGAACGCGACGGCTCGCAGAGGCGGAGATGCACGTCCACCACCTCGAGAGTCTTTTG
GAGCAGAAGGAAAAAGAGAATAATATGTTGAGAGAGGAGATGCACCGGAGATTTGAAAATGCCCCTGATT
CTGCCAAGACAAAAGCCTTGCAAACTGTTATTGAAATGAAGGATTCAAAAATTTCTTCCATGGAGCGTGG
GCTCCGAGACCTGGAAGAGGAAATTCAGATGCTGAAGTCAAATGGGGCTTTGAGTAGTGAGGAGCGGGAG
GAAGAGATGAAGCAAATGGAGGTGTACAGGAGCCACTCAAAGTTTATGAAAAATAAGGTAGAGCAACTGA
AGGAGGAGCTAAGTTCGAAAGATGCTCAAGGGGAGGAGCTGAAAAAGAGAGCGGCTGGTCTTCAGTCTGA
GATTGGCCAGGTGAAACAGGAACTGTCCAGAAAGGACACAGAATTACTAGCCTTACAAACAAAGCTAGAA
ACTCTCACGAACCAATTCTCAGACAGTAAGCAACATATTGAGGTGCTGAAAGAGTCCCTCACTGCTAAGG
AGCAAAGGGCTGCCATCCTACAGACTGAGGTGGATGCTCTTCGATTGCGTTTGGAAGAAAAAGAGACTAT
GCTGAATAAAAAAACCAAGCAAATCCAAGATATGGCTGAGGAGAAGGGCACCCAGGCTGGAGAGATCCAT
GACCTCAAGGACATGCTGGACGTGAAGGAGCGGAAGGTCAATGTCCTCCAGAAGAAGATAGAAAATCTTC
AGGAACAACTAAGAGATAAAGAAAAGCAGATGAGCAGCTTGAAAGAGCGAGTCAAGTCTCTGCAGGCGGA
CACCACTAACACAGACACAGCTCTGACAACTTTGGAGGAGGCTCTTGCAGATAAAGAACGGACAATTGAA
CGCTTAAAGGAGCAGCGGGACAGGGATGAGCGGGAGAAGCAGGAGGAGATTGATACCTACAAAAAAGACC
TCAAAGACCTGAGAGAGAAAGTCAGCCTGCTACAAGGAGACCTCTCAGAAAAGGAGGCTTCTCTCTTGGA
TATCAAAGAGCATGCTTCTTCCCTGGCTTCCTCAGGACTCAAAAAGGACTCGCGGCTCAAGACCCTAGAA
ATTGCTCTTGAGCAGAAGAAGGAAGAGTGCCTAAAAATGGAGTCACAGTTGAAAAAGGCGCATGAAGCAA
CATTGGAAGCCAGAGCCAGTCCAGAGATGAGTGACCGAATACAGCAATTGGAGAGAGAGATTTCCAGGTA
CAAAGATGAATCCAGCAAGGCCCAAACAGAAGTTGACCGTCTCTTGGAAATCTTGAAAGAAGTGGAAAAT
GAGAAGAATGACAAAGATAAGAAGATAGCTGAGTTGGAAAGTCTCACCTCAAGGCAAGTGAAAGACCAGA
ATAAGAAGGTAGCAAATCTGAAACACAAGGAACAGGTGGAGAAGAAGAAGAGTGCCCAGATGCTGGAGGA
GGCCCGCAGAAGGGAGGACAGTCTCAGCGACAGCTCTCAGCAACTGCAGGACAGTCTCCGTAAGAAGGAT
GACAGGATTGAAGAGCTGGAAGAAGCACTGAGAGAAAGTGTACAGATAACTGCAGAGCGTGAAATGGTGC
TGGCACAAGAGGAATCAGCCAGGACCAATGCTGAGAAACAGGTGGAAGAGCTGTTGATGGCTATGGAGAA
GGTGAAGCAGGAACTGGAGTCCATGAAAGCTAAGCTGTCCTCCACCCAGCAGTCTCTGGCCGAGAAGGAG
ACGCACCTAACCAATCTCCGGGCAGAGAGGAGGAAACACTTAGAGGAAGTTCTGGAAATGAAGCAAGAAG
CTCTTCTGGCTGCTATAAGTGAAAAGGATGCTAACATAGCTCTTCTAGAGCTTTCCTCCTCAAAGAAAAA
GACCCAAGAAGAAGTGGCTGCACTGAAACGGGAAAAGGACCGCCTGGTGCAGCAGCTCAAACAGCAGACA
CAAAATCGAATGAAATTAATGGCTGACAACTATGAGGATGACCACTTCAGATCCTCCCGTTCCAATCAGA
CGAACCATAAACCCTCCCCAGACCAGATCATCCAGCCCCTCTTAGAACTTGACCAAAATAGAAGCAAGTT
AAAGTTGTATATTGGACACCTGACAGCCCTCTGCCATGACCGAGACCCCTTAATCCTCCGTGGACTCACT
CCACCAGCTTCTTATAATGCAGATGGTGAGCAGGCAGCTTGGGAGAATGAGCTGCAGAAGATGACTCAGG
AGCAGCTTCAGAACGAGTTGGAGAAAGTTGAAGGGGACAACGCCGAGCTGCAGGAGTTTGCCAACACCAT
TCTCCAGCAGATAGCCGATCACTGCCCTGACATCCTCGAACAAGTGGTCAATGCCCTGGAAGAGTCCTCC
TGA

Translation (1120 aa):
MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGNSVGGGSGKTLSMENIQSLNAAYATSG
PMYLSDHENVGAETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEHHLPPVSMASTVP
HSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITI
WKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKE
LFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLL
EQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEERE
EEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLE
TLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIH
DLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIE
RLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLE
IALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVEN
EKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKD
DRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKE
THLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQT
QNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLELDQNRSKLKLYIGHLTALCHDRDPLILRGLT
PPASYNADGEQAAWENELQKMTQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDILEQVVNALEESS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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