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Report for CCDS39574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39574.1 Public Mus musculus 6 Tafa1 23 108 98 CCDS HistoryNCBI Gene:320265Re-query CCDS DB by CCDS ID:39574.1Re-query CCDS DB by GeneID:320265See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075080.5 ENSMUSP00000074589.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075080.5Link to Ensembl Protein Viewer:ENSMUSP00000074589.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075080Re-query CCDS DB by Protein ID:ENSMUSP00000074589
Original member Current member EBI ENSMUST00000122120.7 ENSMUSP00000113152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122120.7Link to Ensembl Protein Viewer:ENSMUSP00000113152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122120Re-query CCDS DB by Protein ID:ENSMUSP00000113152
Original member Current member NCBI NM_182808.3 NP_877960.1 Accepted alive Link to Nucleotide Sequence:NM_182808.3Link to Protein Sequence:NP_877960.1Re-query CCDS DB by Nucleotide ID:NM_182808Re-query CCDS DB by Protein ID:NP_877960Link to BLAST:NP_877960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_877960.1 133 Q7TPG8 133 100% 0 0

Chromosomal Locations for CCDS 39574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 96115637 96115754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 96523335 96523475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 96649062 96649186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 96654767 96654784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGGCAATGGTCTCTGCAATGTCCTGGGCCCTGTACTTGTGGATAAGTGCTTGTGCGATGCTGCTCTGCC
ATGGGTCACTCCAACACACCTTCCAGCAGCATCACCTGCACCGGCCAGAAGGAGGGACCTGTGAAGTGAT
CGCGGCCCACAGGTGTTGTAACAAGAACCGCATCGAGGAGCGGTCACAAACAGTGAAGTGTTCCTGTTTA
CCTGGGAAAGTGGCTGGGACAACAAGAAACCGACCTTCCTGTGTGGATGCCTCCATAGTAATTGGGAAAT
GGTGGTGTGAGATGGAGCCCTGCCTAGAAGGAGAAGAATGTAAGACACTCCCTGACAATTCTGGATGGAT
GTGTGCTACAGGCAACAAGATTAAGACTACACGAATTCACCCAAGAACCTAA

Translation (133 aa):
MAMVSAMSWALYLWISACAMLLCHGSLQHTFQQHHLHRPEGGTCEVIAAHRCCNKNRIEERSQTVKCSCL
PGKVAGTTRNRPSCVDASIVIGKWWCEMEPCLEGEECKTLPDNSGWMCATGNKIKTTRIHPRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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