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Report for CCDS39542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39542.1 Under review, update Mus musculus 6 Asprv1 23 108 98 CCDS HistoryNCBI Gene:67855Re-query CCDS DB by CCDS ID:39542.1Re-query CCDS DB by GeneID:67855See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043400.7 ENSMUSP00000046121.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043400.7Link to Ensembl Protein Viewer:ENSMUSP00000046121.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043400Re-query CCDS DB by Protein ID:ENSMUSP00000046121
Original member NCBI NM_026414.2 NP_080690.2 Updated not alive Link to Nucleotide Sequence:NM_026414.2Link to Protein Sequence:NP_080690.2Re-query CCDS DB by Nucleotide ID:NM_026414Re-query CCDS DB by Protein ID:NP_080690
Current member NCBI NM_026414.3 NP_080690.3 Pending alive Link to Nucleotide Sequence:NM_026414.3Link to Protein Sequence:NP_080690.3Re-query CCDS DB by Nucleotide ID:NM_026414Re-query CCDS DB by Protein ID:NP_080690Link to BLAST:NP_080690.3

Chromosomal Locations for CCDS 39542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86628174 86629193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGAGGAACCCTGGGGGCCCAGGTTGGGCATCAAAAAGGCCCCTGCAGAAGAAGCAGAACACAGCCTGCC
TCTGTGCCCAGCAGCCAGCCAGACACTTTGTACCGGCTCCCTTCAACTCGTCCAGGCAGGGCAAGAACAC
GGCCCAGCCGACAGAGCCCTCGCTCTCCAGCGTGATTGCGCCCACACTCTTCTGTGCGTTTCTTTACTTG
GCTTGTGTTACTGCTGAACTTCCAGAGGTGAGCAGAAGGATGGCCACCAGCGGAGTCAGAAGCAAGGAAG
GACGCCGGGAGCATGCCTTCGTCCCAGAACCTTTCACTGGTACTAACTTAGCTCCCAGCCTTTGGCTGCA
CCGCTTTGAAGTCATTGATGACCTCAACCATTGGGATCATGCCACCAAACTGAGGTTCCTGAAAGAGTCG
CTCAAGGGAGATGCCCTGGATGTCTACAATGGACTCAGTTCCCAGGCCCAGGGCGATTTCAGTTTTGTGA
AGCAAGCCCTCCTGAGGGCCTTTGGGGCCCCTGGGGAGGCCTTCAGTGAGCCCGAAGAGATTTTGTTTGC
CAACAGCATGGGTAAGGGCTACTACCTTAAAGGGAAGGTTGGCCATGTGCCTGTGAGATTCCTGGTGGAC
TCTGGGGCTCAGGTGTCTGTGGTTCACCCCGCCTTATGGGAGGAGGTCACTGATGGTGACCTGGATACTC
TTCGTCCTTTTAACAATGTGGTCAAAGTGGCCAATGGGGCAGAGATGAAGATCTTGGGTGTGTGGGACAC
AGAAATTAGCCTGGGCAAGACAAAGCTGAAGGCCGAGTTTCTGGTGGCCAACGCCAGCGCAGAAGAGGCT
ATTATTGGCACAGACGTCTTGCAGGACCACAATGCCGTGCTGGACTTCGAACACCGCACCTGCACCCTGA
AGGGGAAGAAGTTCCGCCTGCTCCCTGTCGGGAGCTCCTTGGAGGATGAGTTTGACCTGGAGCTTATTGA
GGAAGAGGAGGGGTCTTCTGCACCGGAGGGCTCCCACTAA

Translation (339 aa):
MRNPGGPGWASKRPLQKKQNTACLCAQQPARHFVPAPFNSSRQGKNTAQPTEPSLSSVIAPTLFCAFLYL
ACVTAELPEVSRRMATSGVRSKEGRREHAFVPEPFTGTNLAPSLWLHRFEVIDDLNHWDHATKLRFLKES
LKGDALDVYNGLSSQAQGDFSFVKQALLRAFGAPGEAFSEPEEILFANSMGKGYYLKGKVGHVPVRFLVD
SGAQVSVVHPALWEEVTDGDLDTLRPFNNVVKVANGAEMKILGVWDTEISLGKTKLKAEFLVANASAEEA
IIGTDVLQDHNAVLDFEHRTCTLKGKKFRLLPVGSSLEDEFDLELIEEEEGSSAPEGSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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