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Report for CCDS39503.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39503.2 Reviewed, update pending Mus musculus 6 Il23r 23 108 98 CCDS HistoryNCBI Gene:209590Re-query CCDS DB by CCDS ID:39503.2Re-query CCDS DB by GeneID:209590See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 39503.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 15 aa longer at the N-terminal.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 39503.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118364.1 ENSMUSP00000113342.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118364.1Link to Ensembl Protein Viewer:ENSMUSP00000113342.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118364Re-query CCDS DB by Protein ID:ENSMUSP00000113342
Original member NCBI NM_144548.1 NP_653131.2 Updated not alive Link to Nucleotide Sequence:NM_144548.1Link to Protein Sequence:NP_653131.2Re-query CCDS DB by Nucleotide ID:NM_144548Re-query CCDS DB by Protein ID:NP_653131
Current member NCBI NM_144548.2 NP_653131.3 Pending alive Link to Nucleotide Sequence:NM_144548.2Link to Protein Sequence:NP_653131.3Re-query CCDS DB by Nucleotide ID:NM_144548Re-query CCDS DB by Protein ID:NP_653131Link to BLAST:NP_653131.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653131.3 644 Q8K4B4 644 100% 0 0

Chromosomal Locations for CCDS 39503.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 67423365 67424003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67426575 67426665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67431606 67431708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67434605 67434691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67452297 67452513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67466275 67466420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67473797 67473957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67478947 67479070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67486096 67486392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67490667 67490769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67491769 67491780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1980 nt):
ATGAAAAGAGAGAGAGAAATGAGAGGCTTCTACTACATTTGGGACATGAGTCACCTCACACTTCAGCTGC
ATGTGGTGATAGCCCTTTATGTGCTCTTCAGATGGTGTCACGGAGGAATCACAAGTATAAACTGCTCTGG
TGACATGTGGGTTGAGCCTGGTGAAATTTTTCAGATGGGCATGAATGTTTCTATATATTGCCAAGAAGCC
CTTAAGCACTGCCGACCAAGGAATCTTTACTTTTATAAAAATGGCTTCAAAGAAGAATTTGATATCACAA
GGATTAATAGAACAACAGCTCGGATTTGGTATAAAGGCTTTTCGGAACCTCATGCCTATATGCATTGCAC
TGCTGAATGTCCTGGTCATTTTCAAGAGACACTGATTTGTGGGAAAGACATTTCCTCTGGACATCCACCG
GATGCCCCCAGCAATCTGACATGTGTCATTTATGAATACTCAGGCAACATGACATGCACCTGGAACACTG
GGAAGCCTACCTACATAGATACCAAGTATATTGTGCATGTGAAGAGTTTGGAGACAGAAGAAGAACAACA
ATATCTTGCCTCAAGCTATGTTAAGATCTCCACTGACTCACTGCAAGGCAGCAGGAAGTATTTGGTATGG
GTCCAAGCTGTCAATTCCCTAGGCATGGAGAACTCACAACAACTACACGTCCATCTGGATGATATAGTGA
TACCTTCTGCGTCCATCATTTCCAGGGCTGAGACTACAAACGATACTGTACCCAAGACCATAGTTTACTG
GAAAAGCAAAACTATGATTGAGAAAGTATTCTGTGAGATGAGATACAAAACAACAACAAACCAAACGTGG
AGTGTTAAAGAATTTGACGCCAATTTCACATATGTACAGCAGTCAGAATTCTACCTGGAGCCAGACAGCA
AGTATGTATTTCAAGTGCGATGTCAAGAAACTGGTAAAAGAAACTGGCAGCCTTGGAGTTCCCCCTTTGT
CCACCAAACTTCCCAAGAAACTGGTAAAAGAAACTGGCAGCCTTGGAGTTCCCCCTTTGTCCACCAAACT
TCCCAGACAGTTTCCCAGGTTACAGCAAAATCATCCCACGAACCTCAGAAGATGGAGATGCTCAGTGCTA
CAATCTTCAGAGGACATCCTGCTTCAGGTAATCATCAAGACATTGGACTTTTGTCGGGAATGGTCTTCTT
GGCCATCATGTTGCCGATTTTTTCTCTGATTGGGATATTTAACAGATCACTTCGAATAGGAATTAAAAGA
AAAGTTTTACTGATGATCCCAAAGTGGCTTTATGAAGATATTCCTAATATGGAAAATAGCAATGTTGCAA
AATTATTACAGGAAAAAAGTGTATTTGAGAATGATAATGCCAGTGAGCAGGCCCTGTATGTGGATCCTGT
CCTTACAGAGATAAGTGAAATCTCTCCCCTGGAACACAAACCCACAGATTACAAAGAAGAAAGGCTCACA
GGACTCCTTGAGACAAGAGACTGTCCTCTAGGAATGTTGTCTACCAGTTCTTCTGTTGTGTATATTCCTG
ACCTCAACACTGGATACAAACCCCAGGTTTCAAATGTTCCTCCTGGAGGAAACCTTTTCATTAACAGAGA
TGAAAGAGACCCTACATCCCTTGAGACCACAGATGACCACTTTGCCAGATTGAAAACATATCCCAACTTC
CAATTTTCTGCTTCAAGTATGGCTTTACTAAACAAAACACTAATTCTTGATGAATTGTGCCTCGTTTTAA
ATCAAGGAGAATTCAATTCTCTTGACATAAAAAACTCAAGACAGGAGGAAACCAGCATCGTTTTGCAAAG
TGACTCACCCAGTGAAACTATCCCAGCGCAGACTCTGTTGTCTGATGAATTTGTCTCCTGTTTGGCAATT
GGGAATGAAGACTTGCCATCTATTAATTCTTACTTTCCACAGAACGTTTTGGAAAGCCATTTCAGTAGAA
TTTCACTCTTCCAAAAGTAG

Translation (659 aa):
MKREREMRGFYYIWDMSHLTLQLHVVIALYVLFRWCHGGITSINCSGDMWVEPGEIFQMGMNVSIYCQEA
LKHCRPRNLYFYKNGFKEEFDITRINRTTARIWYKGFSEPHAYMHCTAECPGHFQETLICGKDISSGHPP
DAPSNLTCVIYEYSGNMTCTWNTGKPTYIDTKYIVHVKSLETEEEQQYLASSYVKISTDSLQGSRKYLVW
VQAVNSLGMENSQQLHVHLDDIVIPSASIISRAETTNDTVPKTIVYWKSKTMIEKVFCEMRYKTTTNQTW
SVKEFDANFTYVQQSEFYLEPDSKYVFQVRCQETGKRNWQPWSSPFVHQTSQETGKRNWQPWSSPFVHQT
SQTVSQVTAKSSHEPQKMEMLSATIFRGHPASGNHQDIGLLSGMVFLAIMLPIFSLIGIFNRSLRIGIKR
KVLLMIPKWLYEDIPNMENSNVAKLLQEKSVFENDNASEQALYVDPVLTEISEISPLEHKPTDYKEERLT
GLLETRDCPLGMLSTSSSVVYIPDLNTGYKPQVSNVPPGGNLFINRDERDPTSLETTDDHFARLKTYPNF
QFSASSMALLNKTLILDELCLVLNQGEFNSLDIKNSRQEETSIVLQSDSPSETIPAQTLLSDEFVSCLAI
GNEDLPSINSYFPQNVLESHFSRISLFQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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