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Report for CCDS39471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39471.1 Public Mus musculus 6 Clcn1 23 108 98 CCDS HistoryNCBI Gene:12723Re-query CCDS DB by CCDS ID:39471.1Re-query CCDS DB by GeneID:12723See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031894.12 ENSMUSP00000031894.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031894.12Link to Ensembl Protein Viewer:ENSMUSP00000031894.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031894Re-query CCDS DB by Protein ID:ENSMUSP00000031894
Original member NCBI NM_013491.3 NP_038519.1 Updated not alive Link to Nucleotide Sequence:NM_013491.3Link to Protein Sequence:NP_038519.1Re-query CCDS DB by Nucleotide ID:NM_013491Re-query CCDS DB by Protein ID:NP_038519
Current member NCBI NM_013491.4 NP_038519.1 Accepted alive Link to Nucleotide Sequence:NM_013491.4Link to Protein Sequence:NP_038519.1Re-query CCDS DB by Nucleotide ID:NM_013491Re-query CCDS DB by Protein ID:NP_038519Link to BLAST:NP_038519.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038519.1 994 Q64347 994 100% 0 0

Chromosomal Locations for CCDS 39471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42286767 42286946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42290073 42290193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42290587 42290718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42291329 42291457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42291625 42291758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42292941 42293018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42294078 42294156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42298799 42298924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42299238 42299322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42299500 42299601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42299905 42299989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42300228 42300377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42305246 42305315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42305471 42305581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42307082 42307295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42307526 42307659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42309941 42310173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42310527 42310665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42310923 42311002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42311212 42311250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42313054 42313158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42313238 42313324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42313807 42314178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2985 nt):
ATGGAGCGGTCCCAGTCCCAGCGGCATGGAGGGGAACAGAGCTGGTGGGGCAGTGCCCCCCAGTACCAGT
ACATGCCCTTTGAACATTGTACCAGCTACGGACTGCCCTCAGAGAATGGGGGCCTTCAGCACCGGCCCCG
AAAGGACATGGGTCCCAGGCACAATGCCCACCCAACACAGATATATGGCCATCAAAAAGAACAATATTCA
TATAAGGCACAGGACGGGGGAATGCCCAAGAAGATGGGCTCCAGTTCTACCATGGACAGCTTGGATGAGG
ACCACTATTCTAAATGTCAAGACTGTGTCCATCGCCTGGGACGTGTGCTGAGAAGGAAGCTGGGGGAAGA
TTGGATCTTTCTTGTGCTCCTGGGCCTCCTGATGGCTCTAGTCAGCTGGTGCATGGACTATGTTAGTGCC
AAGAGCCTTCAGGCCTACAAGTGGACCTATGCCCAGATGAAGCCTAGCCTTCCTCTGCAGTACCTGGCCT
GGGTCACCTTCCCACTTATCCTGATCCTCTTCAGCGCCCTCTTTTGCCAACTCATCTCTCCCCAGGCTGT
GGGCTCTGGAATCCCTGAGATGAAAACAATTCTTCGTGGTGTTGTCTTGAAGGAATACCTCACACTCAAG
GCCTTTGTAGCCAAGGTGGTAGCTTTGACAGCTGGACTGGGCAGTGGCATCCCTGTGGGGAAAGAGGGTC
CCTTTGTTCACATCGCCAGCATCTGTGCTGCTGTCCTCAGCAAGTTTATGTCCATGTTCTCTGGTGTCTA
TGAGCAGCCATACTATTACACTGACATCCTGACAGTGGGCTGTGCCGTGGGGGTCGGTTGCTGTTTTGGA
ACACCACTTGGAGGAGTGCTATTTAGCATCGAGGTCACCTCTACCTACTTTGCTGTTCGGAATTACTGGC
GAGGATTCTTTGCAGCCACATTCAGTGCCTTTGTGTTCCGTGTCCTGGCCGTTTGGAACAAGGATGCTGT
CACCATCACTGCTCTGTTCAGAACGAATTTCCGAATGGATTTCCCCTTTGACCTGAAGGAACTCCCAGCT
TTTGCTGTCATTGGGATTTGCTGCGGGTTCTTGGGAGCTGTTTTCGTTTATCTGCATCGCCAAGTCATGC
TCGGTGTCCGAAAGCACAAGTGTCTCAGCCAATTTCTTGCTAAGCACCGCCTGCTATATCCTGGAATTGT
TACCTTTGTCATCGCCTCGCTCACATTTCCACCAGGAATGGGTCAATTCATGGCTGGAGAGCTGATGCCC
CGTGAAGCTATCAGTACCCTCTTTGACAACAACACATGGGTAAAGCACATAGGTGACCCCCAAAGCTTGG
GCCAGTCAGCTGTGTGGCTTCACCCCCAGGTCAACGTGATCATCATCATCCTTCTCTTCTTCGTTATGAA
GTTTTGGATGTCCATTGTAGCCACCACTATGCCCATACCCTGTGGAGGCTTCATGCCTGTTTTTGTGCTA
GGAGCTGCATTTGGAAGGCTGGTAGGAGAGATCATGGCCATGCTATTCCCTGAGGGTATCTTATTTGATG
ATATCATCTATAAGATCTTACCTGGGGGCTATGCAGTAATTGGAGCAGCAGCTTTGACAGGGGCTGTCTC
CCACACAGTCTCCACAGCCGTCATTTGCTTCGAATTAACCGGTCAGATTGCTCACATCCTGCCCATGATG
GTGGCTGTTATCTTGGCCAACATGGTGGCTCAGAGTCTGCAGCCCTCCCTCTATGACAGCATCATCCAGG
TCAAGAAGCTTCCCTATCTGCCAGACCTTGGTTGGAACCAGCTCAGCAAATTTACAATTTTTGTTGAGGA
CATCATGGTACGTGATGTGAAGTTCGTTTCAGCTTCTTGTACATATGGGGAACTGAGAAACCTACTCCAG
GCCACCACAGTCAAGACTTTACCATTGGTTGACTCCAAAGATTCAATGATCCTGCTGGGCTCTGTGGAAC
GCTCAGAACTGCAGTCCCTCCTGCAGCGCCACCTGTGTGCAGAGCGAAGGTTGAAGGCTGCCCAGGACAT
GGCTCGAAAGTTATCAGAGCTGCCTTATAATGGCAAGGCTCAGCTGGCTGGGGACTGGCATCCTGGTGGT
CGACCTGAGTCCTTTGCCTTCGTAGATGAAGATGAAGATGAGGACCTCTCCAGGAAGATGGAGCTTCCAC
TGACTCCAGCTCCTCCCCCTCCTTCCCCTCCTCCTCCACCTTCCCAGTTTCCTATTGCTCCATCAAACCC
TGAAGAACCTAATGGGCCACTGCCCAGCCATAAACAGCCACCTGAAGCCTCAGACTCTGCAGATCAAAGA
TCATCCACCTTCCAACGCCTGCTGCACTGCTTGCTAGGAAAAGCTCACTCCAAAAAGAAGAAAATAACAC
AGGATTCAACAGATTTAGTGGATAACATGTCACCTGAAGAGATTGAGGCCTGGGAGCGGGAGCAGCTGAG
CCAGCCTGTGTGCTTTGATTGCTGCTGCATCGACCAGTCTCCCTTCCAGCTGGTGGAGCAGACAACCCTG
CACAAGACTCATACACTCTTCTCACTTCTTGGCCTCCATCTTGCCTATGTGACCAGCATGGGGAAGCTCA
GAGGTGTCTTGGCACTAGAAGAGCTACAGAAAGCTATTGAGGGCCACACCAAATCTGGGGTGCAGCTTCG
CCCTCCACTTGCCAGCTTCCGGAATACAACTTCAATCCGGAAGACTCCTGGGGGGCCACCCCCTCCTGCA
GAGGGCTGGAATGTACCTGAGGATGGAGATGGGGCTCCTGGAAGAGAAGTCATGGTTCCTACCATGCCAG
AGACTCCTGTCCCACCACCATCTCCAGAGGCCCCTTCCTGCCTGGCCCCAGCCAGAGCGGAGGGTGAGCT
GGAGGAACTGGAGATGGTGGGGAGCCTAGAGCCTGAGGAGGAGCTGGCTGACATCTTGCATGGCCCCAGT
CTGCGGTCCACTGATGAGGAAGATGAGGACGAGCTGATCCTGTGA

Translation (994 aa):
MERSQSQRHGGEQSWWGSAPQYQYMPFEHCTSYGLPSENGGLQHRPRKDMGPRHNAHPTQIYGHQKEQYS
YKAQDGGMPKKMGSSSTMDSLDEDHYSKCQDCVHRLGRVLRRKLGEDWIFLVLLGLLMALVSWCMDYVSA
KSLQAYKWTYAQMKPSLPLQYLAWVTFPLILILFSALFCQLISPQAVGSGIPEMKTILRGVVLKEYLTLK
AFVAKVVALTAGLGSGIPVGKEGPFVHIASICAAVLSKFMSMFSGVYEQPYYYTDILTVGCAVGVGCCFG
TPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFDLKELPA
FAVIGICCGFLGAVFVYLHRQVMLGVRKHKCLSQFLAKHRLLYPGIVTFVIASLTFPPGMGQFMAGELMP
REAISTLFDNNTWVKHIGDPQSLGQSAVWLHPQVNVIIIILLFFVMKFWMSIVATTMPIPCGGFMPVFVL
GAAFGRLVGEIMAMLFPEGILFDDIIYKILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMM
VAVILANMVAQSLQPSLYDSIIQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSASCTYGELRNLLQ
ATTVKTLPLVDSKDSMILLGSVERSELQSLLQRHLCAERRLKAAQDMARKLSELPYNGKAQLAGDWHPGG
RPESFAFVDEDEDEDLSRKMELPLTPAPPPPSPPPPPSQFPIAPSNPEEPNGPLPSHKQPPEASDSADQR
SSTFQRLLHCLLGKAHSKKKKITQDSTDLVDNMSPEEIEAWEREQLSQPVCFDCCCIDQSPFQLVEQTTL
HKTHTLFSLLGLHLAYVTSMGKLRGVLALEELQKAIEGHTKSGVQLRPPLASFRNTTSIRKTPGGPPPPA
EGWNVPEDGDGAPGREVMVPTMPETPVPPPSPEAPSCLAPARAEGELEELEMVGSLEPEEELADILHGPS
LRSTDEEDEDELIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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