NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39445.1 Public Mus musculus 6 Zfp800 23 108 98 CCDS HistoryNCBI Gene:627049Re-query CCDS DB by CCDS ID:39445.1Re-query CCDS DB by GeneID:627049See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035930.10 ENSMUSP00000039222.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035930.10Link to Ensembl Protein Viewer:ENSMUSP00000039222.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035930Re-query CCDS DB by Protein ID:ENSMUSP00000039222
Original member Current member EBI ENSMUST00000115320.7 ENSMUSP00000110975.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115320.7Link to Ensembl Protein Viewer:ENSMUSP00000110975.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115320Re-query CCDS DB by Protein ID:ENSMUSP00000110975
Original member Current member EBI ENSMUST00000115321.8 ENSMUSP00000110976.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115321.8Link to Ensembl Protein Viewer:ENSMUSP00000110976.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115321Re-query CCDS DB by Protein ID:ENSMUSP00000110976
Original member NCBI NM_001081678.2 NP_001075147.1 Updated not alive Link to Nucleotide Sequence:NM_001081678.2Link to Protein Sequence:NP_001075147.1Re-query CCDS DB by Nucleotide ID:NM_001081678Re-query CCDS DB by Protein ID:NP_001075147
Current member NCBI NM_001081678.3 NP_001075147.1 Accepted alive Link to Nucleotide Sequence:NM_001081678.3Link to Protein Sequence:NP_001075147.1Re-query CCDS DB by Nucleotide ID:NM_001081678Re-query CCDS DB by Protein ID:NP_001075147Link to BLAST:NP_001075147.1
Original member NCBI NM_001364595.1 NP_001351524.1 Updated not alive Link to Nucleotide Sequence:NM_001364595.1Link to Protein Sequence:NP_001351524.1Re-query CCDS DB by Nucleotide ID:NM_001364595Re-query CCDS DB by Protein ID:NP_001351524
Current member NCBI NM_001364595.2 NP_001351524.1 Accepted alive Link to Nucleotide Sequence:NM_001364595.2Link to Protein Sequence:NP_001351524.1Re-query CCDS DB by Nucleotide ID:NM_001364595Re-query CCDS DB by Protein ID:NP_001351524Link to BLAST:NP_001351524.1
Original member NCBI NM_001364596.1 NP_001351525.1 Updated not alive Link to Nucleotide Sequence:NM_001364596.1Link to Protein Sequence:NP_001351525.1Re-query CCDS DB by Nucleotide ID:NM_001364596Re-query CCDS DB by Protein ID:NP_001351525
Current member NCBI NM_001364596.2 NP_001351525.1 Accepted alive Link to Nucleotide Sequence:NM_001364596.2Link to Protein Sequence:NP_001351525.1Re-query CCDS DB by Nucleotide ID:NM_001364596Re-query CCDS DB by Protein ID:NP_001351525Link to BLAST:NP_001351525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075147.1 662 Q0VEE6 662 100% 0 0
NP_001351524.1 662 Q0VEE6 662 100% 0 0
NP_001351525.1 662 Q0VEE6 662 100% 0 0

Chromosomal Locations for CCDS 39445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28241657 28241657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28242977 28244663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28247141 28247284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28256431 28256526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28260718 28260778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGCCTTTGAGGGACAAATACTGTCAAACGGACCACCATCATCACGGATGCTGCGAACCAGTTTATATCC
TGGAGCCTGGAGATCCTCCCTTGTTACAGCAACCAGTGCAGACATCCAAATCTGGTATTCAGCAAATAAT
TGAGTGCTTTCGATCAGGAACCAAACAACTTAAACATATTTTATTAAAAGATGTGGACACTATTTTTGAA
TGTAAATTATGCCGTAGTCTCTTTAGAGGATTACCAAATTTAATTACCCATAAAAAATTTTACTGCCCAC
CAAGTCTCCAAATGGATGACAATCTTCCTGATGTAAATGATAAACAAAGCCAAGCCATAAGTGATCTCCT
AGAAGCCATATATCCAAGAGTGGACAAGAGAGAATATATTATTAAGCTAGAACCCATAGAAACCAACCAA
AATGCAGTGTTTCAATATATTTCAAGGACTGATAACCCTGCTGAAGTGACCGAGTCAAGCAGTACACCTG
AACAAACTGAAGTTCAAATACAGGAGACAAGCTCAGAACAGCTGAAAGCAGTCCCCGACGCAGATACAGA
GGTGGAGGAGGCCATAGAGCCTCCTTCTATAGAGACTGTTGTAGATGAAGCTGCAGCTCCCACTGAGGAG
CAACCTCAGGAATCACAGGCTGACTTGGAGACGTCTGACAGTTCTGACCTTGGTCACCAGTTGATATGTT
GTCTTTGTAGAAAAGAATTCAATTCTAGACGAGGTGTTCGTCGTCACATTCGAAAAGTACACAAAAAAAA
GATGGAAGAACTAAAAAAATACATTGAAACACGGAAGACTCCAAACCAGTCTTCAAAAGGACGCAGTAAG
AGTGTTCTAGTTTCATTAAGTAGGAGCTGTCCAGTTTGTTGTAAATCATTTGCTACAAAAGCGAATGTAA
GGAGGCATTTTGATGAAGTTCACAGAGGACTAAGGAGGGATTCAATTACTCCTGATATAGCGACAAAGCC
TGGGCAGCCTTTGTTCCTGGATTCTGCTTCTCCTAAAAAATCTTTTAAGACTCGCAAACAAAAGTCTTCA
AAGGCTGAATACAATTTAACTGCATGCAAATGCCTCCTTTGCAAGAGGAAATACAGTTCACAAATAATGC
TTAAGAGACATATGCAAATTGTCCACAAGATAACTCTTTCTGGAGCAAACTCTAAAAGAGAGAAAGGCCC
TAATAATACTGCCAACAGTTCAGAAGTAAAAGTTGAGCTAGCAGATTCTGTAGAGTCTTCACCCCCTTCC
ATTACCCATTCTCCACAGAATGAACTCAAGGGAACAAATCATTCAAATGAAAAAAAGAACACACCAGCAA
CACAGAAAAACAAAGTTAAACAGGACTCTGAAAGCCCTAAATCAGCTAGCCCTTCGGCTGCAGGTGGCCA
GCAAAAAACCAGGAAACCAAAACTTTCAGCTGGCTTTGACTTTAAGCAACTTTACTGTAAACTCTGTAAA
CGCCAGTTTACTTCCAAGCAGAACTTGACTAAACACATTGAGTTGCACACAGATGGAAATAACATTTATG
TTAAGTTCTACAAGTGTCCTCTCTGCACTTACGAAACCCGTCGGAAACGTGATGTGATAAGACATATAAC
TGTGGTTCATAAAAAGTCATCTCGTTACCTTGGGAAAATCACAGCCAGTTTAGAGATCAGAGCTATAAAA
AAGCCTATTGATTTTGTTCTAAACAAAGTGGCAAAAAGAGGCCCTTCAAGGGAGGAAGCAAAACATAATG
ACTCAAAACAGGATGGCACTTCCAATTCTCCAAGTAAAAAGTATGAAGTAGCCGACGTCGGTATTGAAGT
GAAAGTCACAAAAAACTTTTCTCTTCACAGATGCAATAAATGTGGAAAGGCATTTGCCAAAAAGACTTAC
CTTGAACATCATAAGAAAACTCATAAGGCAAATGCTACCAATTCACCTGAAGGAAACAAAACCAAAGGCC
GAAGTACAAGATCTAAGGCTCTTGTCTGA

Translation (662 aa):
MPLRDKYCQTDHHHHGCCEPVYILEPGDPPLLQQPVQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFE
CKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAISDLLEAIYPRVDKREYIIKLEPIETNQ
NAVFQYISRTDNPAEVTESSSTPEQTEVQIQETSSEQLKAVPDADTEVEEAIEPPSIETVVDEAAAPTEE
QPQESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKTPNQSSKGRSK
SVLVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSASPKKSFKTRKQKSS
KAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEVKVELADSVESSPPS
ITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKTRKPKLSAGFDFKQLYCKLCK
RQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIK
KPIDFVLNKVAKRGPSREEAKHNDSKQDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTY
LEHHKKTHKANATNSPEGNKTKGRSTRSKALV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH