NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39378.1 Public Mus musculus 5 Baiap2l1 23 108 98 CCDS HistoryNCBI Gene:66898Re-query CCDS DB by CCDS ID:39378.1Re-query CCDS DB by GeneID:66898See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055190.7 ENSMUSP00000053129.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055190.7Link to Ensembl Protein Viewer:ENSMUSP00000053129.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055190Re-query CCDS DB by Protein ID:ENSMUSP00000053129
Original member Current member NCBI NM_025833.3 NP_080109.1 Accepted alive Link to Nucleotide Sequence:NM_025833.3Link to Protein Sequence:NP_080109.1Re-query CCDS DB by Nucleotide ID:NM_025833Re-query CCDS DB by Protein ID:NP_080109Link to BLAST:NP_080109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080109.1 514 Q9DBJ3 514 100% 0 0

Chromosomal Locations for CCDS 39378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 144265957 144266032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144266608 144266645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144275773 144275965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144277645 144277716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144278528 144278738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144280820 144280967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144281990 144282157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144284444 144284596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144285458 144285595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144286075 144286146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144286250 144286311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144318929 144319015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144324557 144324632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144357791 144357841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGTCTCGGGGGCCGGAGGAGGTGAACCGGCTCACGGAGAACACGTACCGGAATGTGATGGAACAATTCA
ACCCTGGACTACGGAACTTAATAAACCTAGGAAAAAATTATGAAAAAGCGGTGAATGCTATGATCCTGGC
AGGAAAAGCCTACTACGACGGCGTGGCCAAGATTGGTGAAATTGCCACTGGGTCTCCTGTGTCAACAGAG
CTAGGCCATGTCCTCATAGAGATTTCCAGCACCCACAAGAAACTCAATGAGACTCTTGATGAAAATTTCA
AAAAATTCCATAAGGATATTATCCATGAGCTGGAGAAGAAGACAGAACTTGATGTAAAGTATATGAACGC
TACTCTTAAAAGATATCAAGCAGAGCACAGGAATAAATTAGATTCTTTGGAGAAATCTCAGGCGGAGCTG
AAGAAGATCAGAAGAAAAAGTCAAGGTGGACGAAACGCACTCAAATACGAGCACAAAGAAATTGAGTATG
TGGAGACGGTGACGTCTCGCCAGAGTGAGATCCAGAAGTTCATTGCCGATGGCTGCAAAGAAGCCCTGCT
TGAGGAAAAAAGGCGCTTCTGCTTTCTGGTGGACAAGCACTGCAGCTTTGCCAGTCACATACACTACTAT
CACATGCAGTCTGCAGAGTTACTTAATTCCAAGCTGCCCCGGTGGCAGGAAACCTGTTGTGATGCCACAA
AAGTCCCAGAGAAAATCATGAACATGATAGAAGAGATAAAGACGCCCATCTCCACCCCCGTGTCCGGGAC
GCCGCAGCCATCGCCCATGATCGAGAGAAGCAAGATGATTGGGAAAGATTATGACACCCTTTCTAAATAC
TCACCAAAGATGCCCCCTGCTCCTTCAGTCAAAGCCTACACCAGTCCTTTGATTGACATGTTCAATAACC
CAGCTACAGCTGCACAGAGTTCAGAAAAAACAAACAACTCCACAGCAAACACTGGGGAAGATCCCAGTCT
ACAGCGATCGGTTTCTGTTGCAACTGGGCTGAACATGATGAAGAAGCAGAAGGTGAAGACCATCTTCCCT
CACACGGCTGGCAACAATAAGACCCTACTGAGCTTTGCCCAGGGGGACGTCCTCACACTGCTCATCCCTG
AGGAGAAGGACGGCTGGCTCTACGGGGAGCATGACACCACCAAAGCGAGGGGCTGGTTCCCATCGTCATA
TACAAAGTTGCTGGAAGAAAATGAAGCAATGTCTGTCCCTACACCAAGCCCTGCACCCGTGAGAAGCATC
AGCACGGTGGACCTGACTGAGAAGAGCAGCGTTGTCATCCCACCTCCCGACTACTTGGAGTGCCTGTCCA
TGGGAGCCACCTCAGACAAGAAAGCGGGCGCTCCCAAGGTGCCTTCTGCTTCTACCTTCAGAGCGCCAGT
GTCCAGACCAGACGCCACATCCACCTCTCCCAGCGATGCCAACGGGACCGCAAAGCCGCCATTCCTCAGT
GGAGAAAACCCCTTTGCCACCGTGAAACTCCGGCCAACAGTGACAAATGACCGATCAGCACCGATCATCC
GATGA

Translation (514 aa):
MSRGPEEVNRLTENTYRNVMEQFNPGLRNLINLGKNYEKAVNAMILAGKAYYDGVAKIGEIATGSPVSTE
LGHVLIEISSTHKKLNETLDENFKKFHKDIIHELEKKTELDVKYMNATLKRYQAEHRNKLDSLEKSQAEL
KKIRRKSQGGRNALKYEHKEIEYVETVTSRQSEIQKFIADGCKEALLEEKRRFCFLVDKHCSFASHIHYY
HMQSAELLNSKLPRWQETCCDATKVPEKIMNMIEEIKTPISTPVSGTPQPSPMIERSKMIGKDYDTLSKY
SPKMPPAPSVKAYTSPLIDMFNNPATAAQSSEKTNNSTANTGEDPSLQRSVSVATGLNMMKKQKVKTIFP
HTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLEENEAMSVPTPSPAPVRSI
STVDLTEKSSVVIPPPDYLECLSMGATSDKKAGAPKVPSASTFRAPVSRPDATSTSPSDANGTAKPPFLS
GENPFATVKLRPTVTNDRSAPIIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH