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Report for CCDS39324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39324.1 Public Mus musculus 5 Rasa4 23 108 98 CCDS HistoryNCBI Gene:54153Re-query CCDS DB by CCDS ID:39324.1Re-query CCDS DB by GeneID:54153See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39324.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042135.13 ENSMUSP00000037869.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042135.13Link to Ensembl Protein Viewer:ENSMUSP00000037869.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042135Re-query CCDS DB by Protein ID:ENSMUSP00000037869
Original member NCBI NM_133914.3 NP_598675.2 Updated not alive Link to Nucleotide Sequence:NM_133914.3Link to Protein Sequence:NP_598675.2Re-query CCDS DB by Nucleotide ID:NM_133914Re-query CCDS DB by Protein ID:NP_598675
Current member NCBI NM_133914.4 NP_598675.2 Accepted alive Link to Nucleotide Sequence:NM_133914.4Link to Protein Sequence:NP_598675.2Re-query CCDS DB by Nucleotide ID:NM_133914Re-query CCDS DB by Protein ID:NP_598675Link to BLAST:NP_598675.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598675.2 802 Q6PFQ7-1 802 100% 0 0

Chromosomal Locations for CCDS 39324.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136084113 136084177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136089353 136089409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136091194 136091307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136091748 136091809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136093138 136093267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136095527 136095608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136096661 136096792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136098688 136098779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136100902 136101019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136101244 136101394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136101625 136101689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136101945 136102057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136102235 136102427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136102528 136102665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136103280 136103424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136103837 136104006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136104516 136104653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136105604 136105739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136107071 136107191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136111252 136111316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136111431 136111552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGGCCAAGCGCAGTTCGCTGTCCATCCGAATCGTAGAAGGGAAAAATCTGCCCGCCAAGGACATCACGG
GCAGCAGCGACCCCTACTGCATCGTGAAGGTGGACAATGAACCCATCATCAGGACAGCCACTGTGTGGAA
GACCCTGTGCCCCTTCTGGGGTGAAGACTACCAAGTACACTTGCCCCCCACGTTCCACACGGTGGCCTTC
TATGTCATGGATGAGGATGCCCTTAGCCGGGACGATGTGATCGGGAAGGTCTGCCTCACGAGGGACGCGC
TAGCCTCTCACCCAAAGGGATTCAGTGGATGGACCCACCTGGTGGAGGTGGACCCGAACGAGGAGGTGCA
GGGTGAGATCCACCTGCGCCTGGAGGTGGTGCCAGGGGTCCATGCCAGCCGGCTGCGCTGCGCGGTGCTT
GAGGCGAGGGACTTAGCACCAAAAGATCGGAATGGCGCATCTGACCCTTTTGTCCGAGTGCACTACAATG
GCCGGACCCAGGAGACCTCGGTGGTGAAGAAATCCTGCTACCCACGCTGGAATGAGACATTTGATTTTGA
GCTGGAAAAAGGAGCCTCAGAAGCACTGCTGGTGGAGGCCTGGGACTGGGATCTTGTTAGCCGGAATGAC
TTTCTAGGCAAAGTGGCGGTCAATGTCCAGAGACTTTGTTCAGCCCAGCAGGAAGAGGGCTGGTTCCGGC
TGCAGCCTGACCAGTCCAAAAGCCGTCAAGGCAAGGGCAACCTGGGCTCCTTGCAGTTGGAAGTGCGGCT
GCGGGACGAGACAGTGCTGCCGTCCGTCTGCTACCAGCCCCTGGTACAACTGTTGTGCCAGGAGGTGAAG
CTGGGCACTCAGGGCCCAGGACGGCTGATTCCTGTCATTGAGGAGACAACTAGTGCCGAGTGTCGCCAGG
AAGTGGCCACCACCCTGCTCAAACTCTTCCTGGGGCAGGGGCTGGCCAAGGACTTTCTGGATCTGCTTTT
TCAGCTGGAGCTGGGCCGCACCAGTGAAGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCC
ATGGAGTCTTTCCTGAAGGTGGCAGGGATGCGCTATCTGCATGGCATCCTGGGCCCCATCATTGACAGAG
TGTTCGAGGAGAAGAAGTACGTGGAGCTGGACCCCAGCAAAGTGGAAGTTAAGGATGTAGGGTGCTCTGG
GCTGCACCGCCCACAGACCGAAGCTGAAGTGTTAGAGCAGAGTGCACAGACGCTGCGTGCCCACTTAGTG
GCGCTGCTGAGCGCCATATGCCGCTCGGTTCGCACGTGCCCAGCCATCATCCGCGCCACATTCCGGCAGC
TGTTCAGGCGCGTGCGCGAGCGCTTCCCGAACGCCCAGCACCAGAACGTACCATTCATCGCGGTCACCAG
CTTCCTGTGCCTGCGCTTCTTCTCTCCCGCCATCCTGTCGCCCAAGCTCTTCCACCTGCGAGAGCGGCAT
GCAGATGCCCGCACCAGCCGCACGCTGCTTCTGCTGGCCAAGGCGGTCCAGAACATAGGCAATATGGACA
CACCGGTCTCTAGGGCCAAAGAGTCGTGGATGGAACCACTCCAGCCTACCGTGCGCCAGGGCGTGGCGCA
GCTGAAGGACTTCATTATGAAGCTTGTGGACATAGAAGAAAAGGAAGAGCTGGACCTGCAGCGGGCTTTG
AACTCACAGGCACCACCTGTGAAGGAGGGACCATTGTTCATCCACAGGACCAAAGGCAAAGGCCCTCTTG
CATCCTCCTCGTTCAAGAAACTCTACTTCTCCCTTACCACTGAAGCCCTCAGCTTCGCCAAGACGTCCAG
CTCCAAGAAAAGCACCTTCATCAAGCTGGCCAGCATCCGGGCTGCGGAGAAGGTGGAGGAAAAGAGCTTC
GGCAGCTCCCACATCATGCAGGTCATCTATGCAGATGATGTTGGCCGTGCCCAGACTGTCTACCTGCAGT
GCAAGTGTGTGAACGAGTTGAACCAGTGGCTGTCTGCATTGCGCAAAGCGAGCACCAACAACAGGGGCCT
CCTACGGTCATACCATCCTGGCATCTTCCGTGGGGACAAGTGGAGCTGCTGTCACCAGAAGGACAAGACA
GATCAGGGATGTGACAAGACCCACTCTCGGGTGACCCTGCAGGAATGGAATGACCCACTGGATCATGACC
TTGAGGCTCAGCTCATCTACAGGCACCTGCTAGGCGTGGAGGCTGCTCTGCGGGAAAGATACCAGCTCCT
GCGTGGGGCGACAGAAGCAGGTGTCTCACCCACGGGCTGTGATGGAGCTCCCGAGGACTCGCTGGCCCAG
CTGCTTCGTGTGCTGCAAGACCTTCGAGAAGCCCACGGCTCCAGCCTGGCCAGCCCAGCAGCCAGAGAGC
CCCATCACCTTCTAGAGCTACAGACGTGA

Translation (802 aa):
MAKRSSLSIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEDYQVHLPPTFHTVAF
YVMDEDALSRDDVIGKVCLTRDALASHPKGFSGWTHLVEVDPNEEVQGEIHLRLEVVPGVHASRLRCAVL
EARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDFELEKGASEALLVEAWDWDLVSRND
FLGKVAVNVQRLCSAQQEEGWFRLQPDQSKSRQGKGNLGSLQLEVRLRDETVLPSVCYQPLVQLLCQEVK
LGTQGPGRLIPVIEETTSAECRQEVATTLLKLFLGQGLAKDFLDLLFQLELGRTSEANTLFRSNSLASKS
MESFLKVAGMRYLHGILGPIIDRVFEEKKYVELDPSKVEVKDVGCSGLHRPQTEAEVLEQSAQTLRAHLV
ALLSAICRSVRTCPAIIRATFRQLFRRVRERFPNAQHQNVPFIAVTSFLCLRFFSPAILSPKLFHLRERH
ADARTSRTLLLLAKAVQNIGNMDTPVSRAKESWMEPLQPTVRQGVAQLKDFIMKLVDIEEKEELDLQRAL
NSQAPPVKEGPLFIHRTKGKGPLASSSFKKLYFSLTTEALSFAKTSSSKKSTFIKLASIRAAEKVEEKSF
GSSHIMQVIYADDVGRAQTVYLQCKCVNELNQWLSALRKASTNNRGLLRSYHPGIFRGDKWSCCHQKDKT
DQGCDKTHSRVTLQEWNDPLDHDLEAQLIYRHLLGVEAALRERYQLLRGATEAGVSPTGCDGAPEDSLAQ
LLRVLQDLREAHGSSLASPAAREPHHLLELQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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