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Report for CCDS39319.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39319.2 Public Mus musculus 5 Srrm3 23 108 98 CCDS HistoryNCBI Gene:58212Re-query CCDS DB by CCDS ID:39319.2Re-query CCDS DB by GeneID:58212See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 39319.1
The coding region has been updated to extend the C-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39319.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000144211.1 ENSMUSP00000115695.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144211.1Link to Ensembl Protein Viewer:ENSMUSP00000115695.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144211Re-query CCDS DB by Protein ID:ENSMUSP00000115695
Original member Current member NCBI NM_021403.3 NP_067378.2 Accepted alive Link to Nucleotide Sequence:NM_021403.3Link to Protein Sequence:NP_067378.2Re-query CCDS DB by Nucleotide ID:NM_021403Re-query CCDS DB by Protein ID:NP_067378Link to BLAST:NP_067378.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067378.2 648 Q80WV7-1 648 100% 0 0

Chromosomal Locations for CCDS 39319.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135835050 135835282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135840353 135840454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135852183 135852311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135852391 135852471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135852892 135852921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135854368 135854430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135854563 135854598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135855869 135855919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135856445 135856549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135857038 135857215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135868173 135868519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135868828 135869052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135869157 135869294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135873080 135873308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGTCCTCCACCGTGAACAACGGGGCTACCGGCATGCCAGCTCCACCGGATGCTGCTAATGGCTTCCCGC
AGCCCGGCGCCTCGTCCGGGTCTTGGCCGCGCGCGGAGGAGGAGCTGCGCGCCGCCGAGCCCGGCTTGGT
GAAGCGCGCGCACCGGGAGATCCTGGACCACGAACGCAAGCGGCGCGTGGAGCTCAAGTGCATGGAGTTG
CAGGAGATGATGGAGGAGCAGGGGTACTCAGAGGAGGAGATCCGGCAGAAGGTCGGGACCTTCCGGCAGA
TGCTGATGGAGAAGGAAGGCGTACTGACCCGGGAGGACCGGCCTGGGGCCCACATCGTGGCAGAGACCCC
GCGACGAATGGAGGGCTTGGAGCCGGGCCTGGAGTACCCACCCTTCGATGAGGACGACGGCCCGGTGGAT
TGCGACTGCCCGGTCTCCTGCTACCGCGGGCACCGGGGGTACAGGACCAAGCACTGGTCCAGCAGCTCTG
CATCGCCCCCTCCCAAGAAGAAGAAGAAAAAGAAAGGCAGTCATCGGAGGAGCCGCAAAAAGAGGAGACT
AGAGTCAGAATGCAGCTGTGGGAGTGCTTCCCCCCTGCGCAAGAAGAAGAAGAATGTGAAGAAACACCGT
CGAGATCGGTCTGATTCTGGGTCCCGGAGGAAGAGACGATACAGATCGAGAAGCCTCAAGAGCAAACGAA
AAGAAAAAAACAAAGAGCGAAAGAGGCCTCACACTGAGTCTCCAGGCCGAAGGTTCCACCACCACAGCAG
CGCCAGCTCCCACAGCCCCTCAATGTCCTCACACTACAGTGATTCTGGATCACCCAGCAGACTGAGCCCC
AAGCATCGAGATGACGGGCGGAAGACAGGCAGCCAGCGATCCAGCGGGAGCCGGTCGCCATCCCCATCGG
GCGGCAGCGGATGGGGGTCGCCCCAGCAGAACGGAGGCAGCAGGCAGCGAAGCGGAGCGCACGGGGGTCG
CCCCGGCTCGGCGCACAGCCCGCCCGATAAGCCCAGCTCGCCCCGGGCCTGCGACAAGGCGGCCGCCGCG
CCCACGCCTCCCGCGCGTGGGAAGGACAGCCAGAGTCCCCGCTCCGCGCCGTCGTCGCAGGGCCGCGGGG
GCCGCGCGGCGGGAGGGACAGCCAGGCGCCGGCGTCGGCGACGGAGGAGGAGACGATCGCGGTCCTCGGC
CAACGCGCCCCGCCGCAGGGGACGCCGGCGTACAAAGCCCGCGCCGCCTCGGGGCTCGTCGCGCTCGCTC
AGCGGGGCACACTCCAGCAGCGACTCCGGTGGCGGCGCCCCGGGCCCCGGGCCCGAGCCCTGCTCCGAGC
GAGGTCACGGCGGACACGGGAAACGGGCAAAGGAGCGCCCCCCGCGCGCACGCCCGGCTAGCACCTCGCC
ATCGCCTGGCACGCGCGGCCGACGGGGCGGCCCAGAGGGCAACAGCTCATCGCGCAGCCCGGGTCCCCAT
CAGGGCTCCTGGAGCTCCAGCCGCTCGCCCTCCAAATCCCACTCGCGCTCCCCAGACAAAAGGACCCGCA
GCCCCAGCCTCTCACCGTCGCCCAAGAAACCTCTTGGCAGGGACAAGGACAGCGAAGGCCGTGCGAGGCA
CGCCGAGGCTGAGGCCGCCCGCACCCGGCGTCGCTCCCGCAGCTACTCGCCCATCCGAAAGCGGCGCCGG
GACTCGCCCAGTTTCATGGAGCCGAGACGCATCACCAGTGCCCGCAAGCGTCCCATCCCCTACTACCGGC
CCAGCCCCTCCTCTTCCTCCAGCTGCTTGAGCACCGACTACTCAAGCCGGAGCCACAGCCGGAGCCCCAG
CCCTGGCCACAGCCATGGAAGCTACAGCAGCCGCAGTCACGGGACTCGCAGCCGCTCCTGCAGCGCCTCC
AGGAGCCGCAGTCCTAGCTACCACAGCCGGAGCAGCTCTGAGAGTGGGGGCTTCTAA

Translation (648 aa):
MSSTVNNGATGMPAPPDAANGFPQPGASSGSWPRAEEELRAAEPGLVKRAHREILDHERKRRVELKCMEL
QEMMEEQGYSEEEIRQKVGTFRQMLMEKEGVLTREDRPGAHIVAETPRRMEGLEPGLEYPPFDEDDGPVD
CDCPVSCYRGHRGYRTKHWSSSSASPPPKKKKKKKGSHRRSRKKRRLESECSCGSASPLRKKKKNVKKHR
RDRSDSGSRRKRRYRSRSLKSKRKEKNKERKRPHTESPGRRFHHHSSASSHSPSMSSHYSDSGSPSRLSP
KHRDDGRKTGSQRSSGSRSPSPSGGSGWGSPQQNGGSRQRSGAHGGRPGSAHSPPDKPSSPRACDKAAAA
PTPPARGKDSQSPRSAPSSQGRGGRAAGGTARRRRRRRRRRRSRSSANAPRRRGRRRTKPAPPRGSSRSL
SGAHSSSDSGGGAPGPGPEPCSERGHGGHGKRAKERPPRARPASTSPSPGTRGRRGGPEGNSSSRSPGPH
QGSWSSSRSPSKSHSRSPDKRTRSPSLSPSPKKPLGRDKDSEGRARHAEAEAARTRRRSRSYSPIRKRRR
DSPSFMEPRRITSARKRPIPYYRPSPSSSSSCLSTDYSSRSHSRSPSPGHSHGSYSSRSHGTRSRSCSAS
RSRSPSYHSRSSSESGGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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