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Report for CCDS39263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39263.1 Public Mus musculus 5 Rhof 23 108 98 CCDS HistoryNCBI Gene:23912Re-query CCDS DB by CCDS ID:39263.1Re-query CCDS DB by GeneID:23912See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031401.5 ENSMUSP00000031401.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031401.5Link to Ensembl Protein Viewer:ENSMUSP00000031401.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031401Re-query CCDS DB by Protein ID:ENSMUSP00000031401
Original member Current member EBI ENSMUST00000160479.7 ENSMUSP00000124866.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160479.7Link to Ensembl Protein Viewer:ENSMUSP00000124866.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160479Re-query CCDS DB by Protein ID:ENSMUSP00000124866
Original member Current member EBI ENSMUST00000186469.6 ENSMUSP00000140177.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186469.6Link to Ensembl Protein Viewer:ENSMUSP00000140177.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186469Re-query CCDS DB by Protein ID:ENSMUSP00000140177
Original member Current member NCBI NM_175092.3 NP_780301.1 Accepted alive Link to Nucleotide Sequence:NM_175092.3Link to Protein Sequence:NP_780301.1Re-query CCDS DB by Nucleotide ID:NM_175092Re-query CCDS DB by Protein ID:NP_780301Link to BLAST:NP_780301.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780301.1 211 Q8BYP3 211 100% 0 0

Chromosomal Locations for CCDS 39263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123119430 123119594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123120296 123120430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123120511 123120620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123131867 123131954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123132235 123132372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGACGCCCCGGGTGCTCCGGCCCCAGCCGCCGCCCCCAGCTCGGCGAGGAAGGAGCTGAAGATAGTGA
TCGTAGGTGACGGCGGCTGCGGCAAGACGTCCCTGCTAATGGTGTACTGCCAAGGCTCATTTCCCGAGCA
CTACGCCCCGTCGGTGTTTGAGAAGTACACGGCTAGTGTGACAGTGGGTAACAAGGAGGTGACCCTGAAC
CTCTACGACACGGCTGGGCAGGAAGACTACGATAGGCTGCGGCCCTTGTCCTACCAGAACACACACCTCG
TCCTCATCTGCTACGATGTCATGAACCCCACCAGTTACGACAACGTCCTCATCAAGTGGTTCCCCGAAGT
CACACATTTCTGCCGAGGGATCCCCACGGTGCTCATCGGCTGCAAGACAGACCTGAGGAAGGACAAGGAG
CAGTTGCGGAAACTCCGGGCAGCTCAGCTGGAGCCTATTACCTACACACAGGGCCTGAATGCCTGTGAAC
AGATGCGAGGTGCACTCTATCTGGAATGTTCTGCCAAGTTTCGGGAGAATGTGGAAGATGTCTTCAGGGA
AGCCGCCAAGGTGGCCCTCAGCGCCCTGAAGAAAGCGCAGAGACAGAAAAAACACAGGATCTGCCTGCTG
CTGTGA

Translation (211 aa):
MDAPGAPAPAAAPSSARKELKIVIVGDGGCGKTSLLMVYCQGSFPEHYAPSVFEKYTASVTVGNKEVTLN
LYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPTVLIGCKTDLRKDKE
QLRKLRAAQLEPITYTQGLNACEQMRGALYLECSAKFRENVEDVFREAAKVALSALKKAQRQKKHRICLL
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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