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Report for CCDS39254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39254.1 Public Mus musculus 5 Tctn1 23 108 98 CCDS HistoryNCBI Gene:654470Re-query CCDS DB by CCDS ID:39254.1Re-query CCDS DB by GeneID:654470See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111738.7 ENSMUSP00000107367.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111738.7Link to Ensembl Protein Viewer:ENSMUSP00000107367.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111738Re-query CCDS DB by Protein ID:ENSMUSP00000107367
Original member Current member NCBI NM_001039153.3 NP_001034242.2 Accepted alive Link to Nucleotide Sequence:NM_001039153.3Link to Protein Sequence:NP_001034242.2Re-query CCDS DB by Nucleotide ID:NM_001039153Re-query CCDS DB by Protein ID:NP_001034242Link to BLAST:NP_001034242.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034242.2 593 Q8BZ64-1 593 100% 0 0

Chromosomal Locations for CCDS 39254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122241692 122241835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122242606 122242725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122245501 122245663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122246485 122246625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122247532 122247617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122247920 122248045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122248849 122248983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122250447 122250467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122251612 122251721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122254484 122254583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122257470 122257621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122258835 122258965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122261407 122261527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122264138 122264369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGGGTCGCGGGGTCTCCCGCCGCTCCTGCTGGTGCTCCTAAACTGCTACACCTCTTCGAGCACCCAGG
TCATTGCCATCCCGGCTGCGGCCACCCCAGCAGTGACGAAGGAGGATCTCAATTCCACCAAGGCCACCCC
CACCACTCTGCAGCCCTCCCTGTCGCCTAGGACCCCGGGAACTCCCAGGGCACCGGAGCGCTCTGGCCCC
AGGCCTACCCCGGTCACGGACGTTGCTGCTCTGTGTGTCTGCGACCTGCTTCCGGCACAGTGTGATGTCA
ACTGCTGTTGCGACCCTGACTGCAGCCCTGCAGATTTCAGCATCTTCTCTGCCTGCTCAGTCCCAGTTGT
CACGGGTGACAGGCAGTTTTGTAGTCAGAAGGCAGCCTTCTACTCAATGAATTTGACAGCAGACCCACCT
CACCGTGACTTTAAACTCATTGATCAGATCAATCCTTCCGTCTTCTGCATCCATATTTCAAACTACAAGC
CTGCACTGTCTTTTGCTAATCCAGAAGTGCCTGATGAAAACAATTTTGACAGACTGATGCAGACATCAGG
TGGCTTTACACTGAGTGCCGAATCCGCTGTTCCTTCCACAGCCGCATCAGATGGCCCACAGCCCACTAAA
TACGAGTATGGAGCCCCTCTGCAGACTGCAGGAGCATCTTCAGGGTCATTTCTGAAACTGCCCTCGCCTC
TCACGTCATCTCTGTGTGCAGATCAGAACCCCGCAGCGTTCCTGGTGAGCCAGGCCTTCGAATGCAGCCG
AAGGGTGGACATAGAACAGTGTGAAGGAATGGAAGCCCTCAGCATGGCTCATTACAGCAGCCCTGCCATT
CTGAGGGTACCTAATTCAATGACACAGGTCTCCATCAAGATCCAGTCTGTAATGTATCGGTCTCTGAATC
ACACACTGACGCAGTTAGAAGGCCATGGTGTCCTGCGGCCATCTCTGGTCAGCACTGGGCAAGACAGACT
CTGCAGCAACGTTGTTCTCCAGGTGAAGTACAGTCTGCTGTACACAGCCACAGGCCAGATCCACGAAGCC
GGCCTCTCCCTCGTTCTGGGGACACTGAGCAGCGCTGTGAGTCTCCTGCAGCAGAAGTTTGAGATTCACT
TTATTCAGCATGGCACCAAGCCTGTTCCTCTCAGCGGCAACCCTGGTTACAGGGTGGGACTCCCGCTGGC
TGCTGGCTTTCAGCCTCAGAAGGGATCTGGGATTATTCAGACAACGAACAGACAAGGCCAATTTACTATT
CTTCGTAGCACGAGCCAGCAGGATTGCCTTGCCAGCGAGGGGCTTCGCACCCCTGTGCTATTTGGCTACA
ATGTGCAGTCTGGCTGTCAGCTCAGGTTGACAGGCACCATCCCTTGTGGGCTTCTGGCACAGAAGGTGCA
GGACCTGCTGAGAGGCCAGGCCTTCCCTGACTATGTGGCTGCCTTTGGGAACTCCCGGGCCCAGGATGTG
CAGGACTGGGTGCCTGTGCACTTTGTCACCTACTCCTCCAACATGAAGGGCTCTTGCCAGCTTCCGGTGG
CTTTGGCTATAGAAGTGAAATGGACTAAGTATGGGTCCCTGCTGAACCCCCAGGCCAGGATAGTAAATGT
CACTGCCCAGCTCGTCTCAGTTCCAGAGCCCCTCCCAGGGCCTGAGAGGACCGTGGTCATTTCCACTGCA
GTGACATTTGTGGATGTGTCAGCCCCTGCAGAGGCAGGCTTCCGAGCCCCACCCACCATCAACGCCAGGC
TACCCTTCAGCTTCTTCTTCCCGTTTGTGTGA

Translation (593 aa):
MGSRGLPPLLLVLLNCYTSSSTQVIAIPAAATPAVTKEDLNSTKATPTTLQPSLSPRTPGTPRAPERSGP
RPTPVTDVAALCVCDLLPAQCDVNCCCDPDCSPADFSIFSACSVPVVTGDRQFCSQKAAFYSMNLTADPP
HRDFKLIDQINPSVFCIHISNYKPALSFANPEVPDENNFDRLMQTSGGFTLSAESAVPSTAASDGPQPTK
YEYGAPLQTAGASSGSFLKLPSPLTSSLCADQNPAAFLVSQAFECSRRVDIEQCEGMEALSMAHYSSPAI
LRVPNSMTQVSIKIQSVMYRSLNHTLTQLEGHGVLRPSLVSTGQDRLCSNVVLQVKYSLLYTATGQIHEA
GLSLVLGTLSSAVSLLQQKFEIHFIQHGTKPVPLSGNPGYRVGLPLAAGFQPQKGSGIIQTTNRQGQFTI
LRSTSQQDCLASEGLRTPVLFGYNVQSGCQLRLTGTIPCGLLAQKVQDLLRGQAFPDYVAAFGNSRAQDV
QDWVPVHFVTYSSNMKGSCQLPVALAIEVKWTKYGSLLNPQARIVNVTAQLVSVPEPLPGPERTVVISTA
VTFVDVSAPAEAGFRAPPTINARLPFSFFFPFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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