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Report for CCDS39193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39193.1 Public Mus musculus 5 Lrrc8b 23 108 98 CCDS HistoryNCBI Gene:433926Re-query CCDS DB by CCDS ID:39193.1Re-query CCDS DB by GeneID:433926See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112707.2 ENSMUSP00000108327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112707.2Link to Ensembl Protein Viewer:ENSMUSP00000108327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112707Re-query CCDS DB by Protein ID:ENSMUSP00000108327
Original member NCBI NM_001033550.3 NP_001028722.1 Updated not alive Link to Nucleotide Sequence:NM_001033550.3Link to Protein Sequence:NP_001028722.1Re-query CCDS DB by Nucleotide ID:NM_001033550Re-query CCDS DB by Protein ID:NP_001028722
Current member NCBI NM_001033550.4 NP_001028722.1 Accepted alive Link to Nucleotide Sequence:NM_001033550.4Link to Protein Sequence:NP_001028722.1Re-query CCDS DB by Nucleotide ID:NM_001033550Re-query CCDS DB by Protein ID:NP_001028722Link to BLAST:NP_001028722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028722.1 803 Q5DU41-1 803 100% 0 0

Chromosomal Locations for CCDS 39193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 105479790 105481928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105485803 105486075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGATTACACTAACAGAGTTAAAATGCTTAGCGGACGCCCAGTCATCCTACCACATACTGAAGCCGTGGT
GGGATGTCTTCTGGTATTACATCACCCTCATCATGCTGTTGGTGGCTGTGCTGGCCGGAGCCCTGCAGCT
CACCCAGAGCAGGGTTCTCTGCTGTCTTCCCTGCAAGGTGGAATTTGACAATCAGTGCGCTGTGCCTTGG
GACCTCCTGAAAGGCAGCGAGAACGCATCTTCTAACTCGGGCCTGCTGCTCCCGCTGCCACTCCGGATCC
AGAACGACCTCCACCGGCAGCAGTACTCCTACATCGATGCTGTCTGCTACGAGAAACAGCTCCATTGGTT
CGCCAAGTTTTTCCCCTATCTGGTGCTTCTGCACACCCTCATCTTCGCAGCCTGCAGCAACTTCTGGCTT
CACTACCCCAGCACCAGCTCGAGGCTGGAACACTTTGTGTCCATCCTCCACAAGTGCTTCGACTCTCCGT
GGACCACACGCGCCCTGTCAGAGACAGTGGCGGAACAGTCAGTGAGGCCCCTGAAGCTCTCCAAGTCCAA
AACCTTGCTCTCAACCTCAGGGGGCTCCGCCGACATCGACGCCAGCAAGCAGTCATTGCCCTACCCACAG
CCAGGCTTGGAGTCGCCTGGCATAGAAAGCCCAACTTCTAGCGTCCTGGACAAGAAGGAGGGCGAACAAG
CCAAGGCCATCTTTGAAAAAGTGAAGAGGTTCCGCCTGCACGTGGAGCAGAGGGATATCATCTACCGGGT
GTACCTGAAGCAGATAATCGTTAAAGTCATCCTGTTTGTCCTTATTATAACCTACGTCCCCTACTTTCTC
AGCTACATAACTCTTGAAATCGACTGTTCGATCGACGTGCAGGCATTTACAGGCTATAAGCGCTACCAGT
GTGTCTACTCCTTGGCAGAAATCTTCAAGGTCCTAGCTTCCTTTTACGTCATTCTGGTGATGCTTTACGG
CCTCACGTCCTCCTACAGCCTGTGGTGGATGCTGAGGAGTTCCTTGAAGCAGTACTCCTTTGAGGCTCTC
AGGGAGAAAAGCAACTACAGCGACATCCCCGATGTCAAGAACGACTTTGCCTTCATCCTCCACCTGGCCG
ACCAGTACGACCCCCTGTACTCTAAGCGCTTCTCCATCTTCCTGTCGGAGGTCAGCGAGAACAAACTGAA
ACAGATCAACCTCAACAACGAGTGGACCGTGGAGAGACTGAAGAGCAAGCTCGTGAAAAACTCGCAGGAC
AAGGTCGAGCTGCATCTCTTCATGCTCAACGGTCTCCCGGATAACGTCTTTGAGCTGACGGAGATGGAAG
TGCTGAGCCTGGAGCTGATCCCGGAAGTCAAGCTGCCGGCTGCCGTCGCTCAGCTCGTCAACCTCAGGGA
GCTCCACGTGTACCATTCGTCCCTGGTGGTCGACCACCCCGCCCTGGCCTTTCTAGAGGAGAACTTAAGA
ATCCTCCGCCTGAAATTTACCGAGATGGGGAAGATCCCACGCTGGGTGTTCCACCTGAAGAACCTCAAGG
AGCTGTACCTGTCGGGCTGCGTTCTCCCGGAGCAGCTGAGCAGCTTGCACCTGGAGGGCTTCCAGGACTT
GAAGAACCTGAGGACCCTCTACTTGAAGAGCAGCCTGTCGCGGATCCCTCAGGTGGTGACAGACCTGCTG
CCCTCCCTGCAGAAGCTGTCCCTTGATAATGAGGGAAGCAAACTGGTTGTGCTGAACAACCTGAAGAAGA
TGGTCAATCTGAAAAGCCTGGAGCTGCTCAGCTGCGACCTGGAGCGCATCCCCCACTCCATTTTCAGCCT
GAACAACCTGCACGAGCTGGACCTGAAGGAGAACAACCTCAAGACCGTAGAGGAGATCATCAGCTTCCAG
CACCTCCCGAGCCTCTCCTGCCTGAAGCTCTGGCACAATAACATCGCTTACATCCCCGCGCAGATCGGAG
CGCTGTCTAACCTGGAGCAGCTCTTCCTGGGTCACAACAACATCGAGAGTCTCCCTCTGCAGCTTTTTCT
ATGCACCAAACTACACTACTTGGATCTAAGCTATAACCATCTGACCTTCATTCCCGAGGAAATCCAGTAC
CTGACCAATCTGCAGTACTTTGCTGTGACCAACAATAACATTGAGATGCTACCAGACGGGCTGTTCCAAT
GCAAGAAGCTTCAGTGTCTACTCCTGGGAAGAAATAGCCTAACAGATTTGTCCCCTCTGGTGGGGGAGCT
GTCAAACCTCACCCACCTGGAACTCACTGGTAACTACCTGGAGACACTGCCTGTGGAGCTGGAAGGGTGT
CAGTCTCTGAAACGGAGCTGTCTGATTGTCGAGGACAGTTTGCTCAATTCCCTCCCGCTTCCCGTGGCAG
AACGCTTGCAGACCTGCTTAGATAAATGTTAA

Translation (803 aa):
MITLTELKCLADAQSSYHILKPWWDVFWYYITLIMLLVAVLAGALQLTQSRVLCCLPCKVEFDNQCAVPW
DLLKGSENASSNSGLLLPLPLRIQNDLHRQQYSYIDAVCYEKQLHWFAKFFPYLVLLHTLIFAACSNFWL
HYPSTSSRLEHFVSILHKCFDSPWTTRALSETVAEQSVRPLKLSKSKTLLSTSGGSADIDASKQSLPYPQ
PGLESPGIESPTSSVLDKKEGEQAKAIFEKVKRFRLHVEQRDIIYRVYLKQIIVKVILFVLIITYVPYFL
SYITLEIDCSIDVQAFTGYKRYQCVYSLAEIFKVLASFYVILVMLYGLTSSYSLWWMLRSSLKQYSFEAL
REKSNYSDIPDVKNDFAFILHLADQYDPLYSKRFSIFLSEVSENKLKQINLNNEWTVERLKSKLVKNSQD
KVELHLFMLNGLPDNVFELTEMEVLSLELIPEVKLPAAVAQLVNLRELHVYHSSLVVDHPALAFLEENLR
ILRLKFTEMGKIPRWVFHLKNLKELYLSGCVLPEQLSSLHLEGFQDLKNLRTLYLKSSLSRIPQVVTDLL
PSLQKLSLDNEGSKLVVLNNLKKMVNLKSLELLSCDLERIPHSIFSLNNLHELDLKENNLKTVEEIISFQ
HLPSLSCLKLWHNNIAYIPAQIGALSNLEQLFLGHNNIESLPLQLFLCTKLHYLDLSYNHLTFIPEEIQY
LTNLQYFAVTNNNIEMLPDGLFQCKKLQCLLLGRNSLTDLSPLVGELSNLTHLELTGNYLETLPVELEGC
QSLKRSCLIVEDSLLNSLPLPVAERLQTCLDKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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