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Report for CCDS39189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39189.1 Public Mus musculus 5 Aff1 23 108 98 CCDS HistoryNCBI Gene:17355Re-query CCDS DB by CCDS ID:39189.1Re-query CCDS DB by GeneID:17355See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031256.5 ENSMUSP00000031256.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031256.5Link to Ensembl Protein Viewer:ENSMUSP00000031256.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031256Re-query CCDS DB by Protein ID:ENSMUSP00000031256
Original member NCBI NM_001080798.2 NP_001074267.1 Updated not alive Link to Nucleotide Sequence:NM_001080798.2Link to Protein Sequence:NP_001074267.1Re-query CCDS DB by Nucleotide ID:NM_001080798Re-query CCDS DB by Protein ID:NP_001074267
Current member NCBI NM_001080798.3 NP_001074267.1 Accepted alive Link to Nucleotide Sequence:NM_001080798.3Link to Protein Sequence:NP_001074267.1Re-query CCDS DB by Nucleotide ID:NM_001080798Re-query CCDS DB by Protein ID:NP_001074267Link to BLAST:NP_001074267.1

Chromosomal Locations for CCDS 39189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 103754705 103754745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103783124 103783244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103783656 103784513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103811063 103811107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103814982 103815068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103816213 103816249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103818935 103818986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103825980 103826034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103826143 103826180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103828348 103828510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103833470 103834459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103841056 103841153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103842227 103842467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103842988 103843088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103843208 103843268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103846234 103846367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103847036 103847107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103847714 103847851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103849350 103849576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103850702 103850823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3681 nt):
ATGGAAACGAGGATTCTCCCACGAGAGAGTGGTGGAGCCTGCTTGTACAATGAAGATAGAAACCTGCTTC
GAATCAGAGAGAAGGAAAGACGCAACCAAGAAGCTCACCAGGAGAAGGAGGCATTTCCCGAGAAGGCTCC
CCTGTTTCCAGAGCCTTACAAGACTGCAAAAGGCGATGAGCTATCAAGTCGGATCCAGACCATGCTGGGT
GACTATGAGGAGATGAAGGAGTTCCTGAGCAGCAAGTCCCACCCCCACCGCCTGGATGGCTCTGAAGACA
GGCCCGGGAAGCCCAGATATCCCTTAGGTCATGACAGGGGGAACGGGGCTGCATCCAGCTCCCTCCGCAC
ACATGTCTACCACCAGCCTATCCACACTTCTGCTCCCGGATCACGTCCTGTCGGTAACATTAGCCACAGT
CCAAAGATGGCACAGCCAAGGATGGAGCCAAGTCTCCACACCAAAATCTATGATGGCCCACGTCTGACTC
AAGACCACCTCAGTCAGGGACATTGTTCCAGAAAGTGTGACCGAAGAGCTGAAGGAGACTCTGCTCCCGA
GAGGAAGCTCTCGCCCTTGATCTCCTCTTTGCCATCCCCGGTGCCCCCTCTATCACCTGTACATTCCAGG
CTGCAGGGAACCAGCAAGGCTCACAGCAGTGGCGTTAGCAGTAAAAGCTGCTGTGTGGCCAAGTCTTCCA
AGGACTTGGTGGCGAAGGCCCAAGATAAAGAGACTCCTCATGACGGTTTGGTGGCAGTTACCAGCCTTGG
ATCAGCCCCTCCTCAGCCACCTTGCCAGACATTTCCACCCCCTCCTCTCCCCTCAAAAAGTGCTGCAATG
CAGCAGAAGCCCACGGCATATGTCCGTCCCATGGACGGTCAGGATCAGGCTCCCAGTGAGTCCCCCGAGC
TGAAGCTGCCACTGGAGGACTATGGTCAGCAAAGCTTTGAGAAACCAGACCTTAAAGTGCCTGCCAAAGC
CAAGCTCACCAGACTAAGGATGCCCTCTCAGTCGGTGGAGCAGCCGTACTCCAATGAAGTCCATTGCGTT
GAAGAGATTCTGAAGGAAATGACCCACTCGTGGCCACCGCCTCTGACAGCCATACACACACCCAGTACAG
CCGAGCCGTCCAGATTTCCTTTCCCCACAAAGGACCCTCTGCACGTCAGTCCTGCAACCCAGAGCCAAAA
ACAATATGACACGCCTTCAAAAACCCACCCCAATCCCCAGCAAGGAACCTCCATGCTGGAGGACGACCTG
CAGCTCAGCGACAGTGAAGACAGCGACACGGAGCAAGCCACAGAGAAGCCTCCATCCCCACCTGCACCTC
CCAGCGCTCCGCAGACACTTCCCGAGCCCGTGGCCTCAGCACATTCCAGTAGTGGGGAGTCAGAGAGCAG
CGAGTCAGACAGTTCCTCAGACTCTGAGAGTGAGAGCAGCTCCAGCGACAGCGAGGAGGAGGAAGAGAAC
GAGCCCCTGGAGACCCGGGCTCCCGAGCCCGAGCCTCCGACGACAAACAAATGGCAGCTGGACAACTGGT
TGACCAAAGTCAACCAACCCTCAGTGCCCCTGGATGGCCGGGGGAGCACAGAGTCTCCACAATGGCGCCA
GGAAAGTAAGGGTGTCGCTGAGGGCAGCAGTGACCAGCAGCATCCTGATTCCAAAGACCCTCTCCCAAAG
AGCTCCAGCAAGACTCTCCGGGGTCCCTCTGAGGGGCCCCAGCCTGGGAAGAGGGGCTGTCCGAAATCCC
CCGCTCAACAGGAACCCCCACCTCGGCAAACCGTGGGCAGCAAACAACCCAGGAAACCCGCCAAGGGCTC
CGGCCAGGCAGAGCCCCAGGCCAGCTCGCAGGCAGAGAGTGAAGTAGGACCCCTTCCCTACGGCTCAAAG
GAGCAGACTTCCAAAGACAGACCCAAGGTGAAGACGAAAGGCAGGCCGCGTGCCGTGGGCAGTCGGGAGC
CTAAGCCAGAGGTCCCTGCGCCCACGCCTCAGGCAGCCGTGCCCAGACCGAAGCCGCCTGTGCCCACCCC
CAGTGAGAAGAGGAAGCACAAGAGCTCCACGGCCCCCTCCAAGGCGCCCTCAGCCCCCCAGCCTCCGAAG
GACAGTGCTGGGGACAGGAACCCAGAACACTCTGCTCTTGTCTCCTTGACTCAGAGCCAGGGTCCATCCC
ACAGCAGCAGGGGCAGCAGTGGCAGCGTCAGGACTAGTGGCTGCCGACAGGCTGTGATTGCCCAAGGGGA
CGGCTGTAAAGACAAGCTCCTGTTGCCTTTGAGAGACACCAAATTGCTCTCGCCGCTCAGGGACTCCCCA
CCACCGACAAGCTTGGTGGTGAAGATAACCCTAGACCTCCTCACGAGGATTCCCCAGCCTCTGGGGAAGG
GGAGCCGCCCCAGGAAAGCAGAAGACAAGCAGCTGTCAGCAGGGAAGAAGCAGGACTCGGAGACCAAGAG
CTGTGACAGCTCCAGCAGAGTGACCAAGAAGAGAAAGGGTGACCCAGAAAAAGAGCACAGTAACAAGAGA
CACAAACTGGATAAGTCGCAGACTGCGTCATCTTCATCTTCCCATACAGAATCTTCCAGAACAAAAGCGC
CCAGGTCCTCCTCAGAGAACTCAAGAAAGGAAATGCTGCCTCCAGCATCGGCGTCCTCAGTCTCCTCTTC
CTCATCCTCCCAGAAGCCAAGCAGACCTGCACAGAAGAGGCCAAGGCCAGACGAAGACACGTGTAGCCAG
GAACCCCCCAGAAGTGCCAGCAGCACAAAGAGCAGCTCTACAGACCCTCCCGCTCCCAAGCACAGAAAAG
TACAGGCCAGGGGCTCTGAACACAAGGGATCTTCTGGGGATGCTGCGAATGCTGCAAATCCTTTTCCAGT
GCCTTCTTTGCCGAATGGTAACGCTAAACCAGGGAAGCCACAGGTGAAGTCTGACAGACAACAAGCTGAC
TTTCACATGAAGGAGGCTAAAAAGCTGAAGTGCAAAGCAGAGACAATGGTAGACAAGGCTGGAAAAGCCT
TCAAGTATTTGGAAGCCGTCCTCTCTTTTATCGAGTGTGGAATGGCCTCAGAGTCAGAAAGCTCAGCCAA
GTCGGCGTACGCTGTGTACTCAGAAACCATAGACCTCATTAGGTATGTGATGTCACTAAAATGCTTCTCA
GATAACACGATGCCAGCACAAGAGAAGATATTTGCTGTTTTATGCTTGCGTTGCCAGTCCCTTTTGAACA
TGGCGATGTTTCGATGTAAGAAAGACACAGTGATGAAGTATTCTCGTACTCTCAGTGAACACTTCAAGAG
TACTTCCAAAGTGGCCCAGGCACCTTCTCCATGCACGGCAAGAAGCACAGGCGTTCCGTCCCCCCTCTCC
CCAATGCCTTCTCCTGCCAGCTCCGTGGGGTCCCAATCAAGTGCTGGCAGCAGTATGGGGAGCGTCGGGG
TGACGGCCACCGTCAGTACTCCAGTCTCCATCCAGAACATGACCTCCTCCTATGTCACCATCACATCCCA
TGTCCTTACGGCCTTTAGCCTTTGGGAACAGGCCGAGGCCCTCACAAGGAAGAACAAAGAATTCTTCGCT
CAGCTCAGCACAAAAGTGCGTGTGTTGGCCCTCAACAGCAGCCTGGTGGACCTGGTGCACTACACAAGAC
AGGGCCTGCAGCGGCTAAAACAGTCACCCAAAGGCCCCTAA

Translation (1226 aa):
METRILPRESGGACLYNEDRNLLRIREKERRNQEAHQEKEAFPEKAPLFPEPYKTAKGDELSSRIQTMLG
DYEEMKEFLSSKSHPHRLDGSEDRPGKPRYPLGHDRGNGAASSSLRTHVYHQPIHTSAPGSRPVGNISHS
PKMAQPRMEPSLHTKIYDGPRLTQDHLSQGHCSRKCDRRAEGDSAPERKLSPLISSLPSPVPPLSPVHSR
LQGTSKAHSSGVSSKSCCVAKSSKDLVAKAQDKETPHDGLVAVTSLGSAPPQPPCQTFPPPPLPSKSAAM
QQKPTAYVRPMDGQDQAPSESPELKLPLEDYGQQSFEKPDLKVPAKAKLTRLRMPSQSVEQPYSNEVHCV
EEILKEMTHSWPPPLTAIHTPSTAEPSRFPFPTKDPLHVSPATQSQKQYDTPSKTHPNPQQGTSMLEDDL
QLSDSEDSDTEQATEKPPSPPAPPSAPQTLPEPVASAHSSSGESESSESDSSSDSESESSSSDSEEEEEN
EPLETRAPEPEPPTTNKWQLDNWLTKVNQPSVPLDGRGSTESPQWRQESKGVAEGSSDQQHPDSKDPLPK
SSSKTLRGPSEGPQPGKRGCPKSPAQQEPPPRQTVGSKQPRKPAKGSGQAEPQASSQAESEVGPLPYGSK
EQTSKDRPKVKTKGRPRAVGSREPKPEVPAPTPQAAVPRPKPPVPTPSEKRKHKSSTAPSKAPSAPQPPK
DSAGDRNPEHSALVSLTQSQGPSHSSRGSSGSVRTSGCRQAVIAQGDGCKDKLLLPLRDTKLLSPLRDSP
PPTSLVVKITLDLLTRIPQPLGKGSRPRKAEDKQLSAGKKQDSETKSCDSSSRVTKKRKGDPEKEHSNKR
HKLDKSQTASSSSSHTESSRTKAPRSSSENSRKEMLPPASASSVSSSSSSQKPSRPAQKRPRPDEDTCSQ
EPPRSASSTKSSSTDPPAPKHRKVQARGSEHKGSSGDAANAANPFPVPSLPNGNAKPGKPQVKSDRQQAD
FHMKEAKKLKCKAETMVDKAGKAFKYLEAVLSFIECGMASESESSAKSAYAVYSETIDLIRYVMSLKCFS
DNTMPAQEKIFAVLCLRCQSLLNMAMFRCKKDTVMKYSRTLSEHFKSTSKVAQAPSPCTARSTGVPSPLS
PMPSPASSVGSQSSAGSSMGSVGVTATVSTPVSIQNMTSSYVTITSHVLTAFSLWEQAEALTRKNKEFFA
QLSTKVRVLALNSSLVDLVHYTRQGLQRLKQSPKGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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