NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3918.1 Public Homo sapiens 5 RANBP3L 24 110 108 CCDS HistoryNCBI Gene:202151Re-query CCDS DB by CCDS ID:3918.1Re-query CCDS DB by GeneID:202151See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3918.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296604.8 ENSP00000296604.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296604.8Link to Ensembl Protein Viewer:ENSP00000296604.3Re-query CCDS DB by Nucleotide ID:ENST00000296604Re-query CCDS DB by Protein ID:ENSP00000296604
Original member Current member NCBI NM_145000.5 NP_659437.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145000.5Link to Protein Sequence:NP_659437.3Re-query CCDS DB by Nucleotide ID:NM_145000Re-query CCDS DB by Protein ID:NP_659437Link to BLAST:NP_659437.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659437.3 465 Q86VV4-1 465 100% 0 0

Chromosomal Locations for CCDS 3918.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36249654 36249697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36251313 36251499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36253647 36253789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36255470 36255590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36256941 36257071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36257454 36257556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36260780 36260864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36261939 36262042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36264959 36265098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36265449 36265520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36269390 36269467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36269951 36269990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36271253 36271311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36301326 36301416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGACTACCATACCAAGAAAAGGCAGCAGCCACCTGCCTGGCAGTTTGCACACCTGTAAACTGAAGCTGC
AGGAGGACCGGCGACAGCAAGAAAAATCTGTCATTGCTCAACCCATATTTGTTTTTGAAAAGGGAGAACA
AACTTTTAAGAGACCTGCAGAAGACACCCTGTATGAAGCAGCAGAACCAGAATGTAATGGTTTTCCAACA
AAGCGTGTACGGTCTTCATCTTTTACTTTTCATATTACAGATTCTCAGTCCCAGGGAGTGAGGAAAAACA
ATGTTTTTATGACATCAGCTCTTGTGCAAAGTAGTGTTGATATAAAGAGTGCTGAACAAGGTCCTGTGAA
ACATTCTAAACATGTTATTAGACCTGCTATTTTGCAGCTACCTCAAGCTCGAAGTTGTGCAAAAGTAAGA
AAAACATTTGGACACAAGGCACTGGAATCTTGCAAGACTAAAGAAAAAACAAATAATAAGATTTCTGAGG
GAAATTCCTATTTGTTAAGTGAAAATTTATCAAGGGCTAGAATTTCAGTCCAGCTGTCTACTAACCAGGA
CTTTTTAGGTGCAACATCAGTAGGATGTCAACCAAATGAAGATAAATGTTCTTTTAAAAGCTGCAGTTCC
AATTTTGTTTTTGGAGAAAACATGGTAGAAAGAGTTTTGGGTACTCAAAAACTCACCCAGCCTCAACTTG
AAAATGATTCATATGCCAAGGAAAAACCATTCAAATCCATTCCGAAATTTCCTGTCAACTTTTTAAGTTC
AAGAACAGACTCTATTAAAAATACTTCCCTAATTGAATCAGCTGCTGCATTCTCTTCCCAACCATCACGA
AAATGCTTGCTGGAGAAAATTGATGTTATAACAGGGGAGGAAACAGAACATAATGTGTTAAAGATAAACT
GCAAGCTTTTCATATTCAACAAAACAACACAATCCTGGATTGAAAGGGGCAGAGGAACGTTGAGACTGAA
TGACACAGCAAGCACTGACTGTGGAACATTACAGTCAAGACTAATTATGCGCAATCAAGGCAGTCTAAGG
CTGATCCTCAACAGCAAACTCTGGGCCCAAATGAAGATTCAAAGAGCAAACCACAAAAATGTACGAATAA
CAGCTACTGATTTAGAAGACTATAGCATCAAAATATTTTTAATTCAGGCCAGTGCCCAAGATACAGCATA
TTTGTATGCAGCAATACATCATCGTCTTGTTGCACTTCAAAGCTTCAATAAGCAGAGAGATGTCAATCAA
GCTGAAAGCCTGTCAGAAACAGCCCAACAATTGAACTGCGAAAGCTGTGATGAGAATGAGGATGATTTCA
TCCAAGTCACTAAAAATGGATCAGATCCTTCTAGTTGGACTCACAGACAGTCGGTTGCCTGTTCATGA

Translation (465 aa):
MTTIPRKGSSHLPGSLHTCKLKLQEDRRQQEKSVIAQPIFVFEKGEQTFKRPAEDTLYEAAEPECNGFPT
KRVRSSSFTFHITDSQSQGVRKNNVFMTSALVQSSVDIKSAEQGPVKHSKHVIRPAILQLPQARSCAKVR
KTFGHKALESCKTKEKTNNKISEGNSYLLSENLSRARISVQLSTNQDFLGATSVGCQPNEDKCSFKSCSS
NFVFGENMVERVLGTQKLTQPQLENDSYAKEKPFKSIPKFPVNFLSSRTDSIKNTSLIESAAAFSSQPSR
KCLLEKIDVITGEETEHNVLKINCKLFIFNKTTQSWIERGRGTLRLNDTASTDCGTLQSRLIMRNQGSLR
LILNSKLWAQMKIQRANHKNVRITATDLEDYSIKIFLIQASAQDTAYLYAAIHHRLVALQSFNKQRDVNQ
AESLSETAQQLNCESCDENEDDFIQVTKNGSDPSSWTHRQSVACS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH